Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2964 ATGAAACAAGAAAACCACGACTGTTCTTTGCGGAACATTCAATTTTGGAACTCCGAAGACACAGCTTTACGTGTTAAGCTGGACGTGGTGAAGTTTTCCAACATCCTATTAATGGAGAATTCATCTGAGGTACTCGGCTCAAAAGGCTTGATTAAAAAACATGAATTTGTGAGGATCATAATTCAGTGCCTATATGCATTAGGGTACAGTAAGTCTGCATCATGTTTGGAATTGGAATCTGGTATTTCATTCAAGTCTGCAGAATTTCAATTGCTCGAAGCACAGATACTTAATGGGAATTGGGATGGTTGCATCAGCACTCTTAATTTGATAAATGATATGATGGATGAAACTAGAGAATCCGCTATGTTTCTTGTCCTCAGACAGTGTCTCCTGGAGTATTTAAGTTGTGGCCAGGATGCTTTAGCTTTGGATGTATTAAGGAAACAGGTTTCTGCATTACATGTGGACAAATGCAAAGTTCACAGCTTGGCTAACAGTATGCTTTCCTTGAAGGATACGGAGTTAGATTTAATAGATGGCACCATTATTCATGATTTGCGAAGGAAGTTGTTAACTGATTTGGAAAAATTGTTCCCTCCTCCAATTGCAGTACCTGAAAGAAGGTTGGAGCATTTAGTTGAAACAACTGTTACAGCCTGGATTGATTCATGTATGTATCACAGTTCATCAAATCCAGTTTCACTTTATGAGGACCATTGTTGTGGTCGGGATGAAATTCCTACTGAAACCACTCAGATTTTGAGTGGGCATAAAAATGAAGTTTGGTTTGTTCAATTTTCTAATAATGGGGAGTACCTTGCCTCTTCATCGAATGATTGTACAGCCATCATATGGAAGGTGCTGGAAGATGGGAAATTGACACTGAAGTACACACTTCAAGGCCACCAACGTGCTGTATCTTTTGTGGCATGGAGTCCTGATGACACCAAGTTGCTCACATGTGGGAACACTGAAGTATTGAAGCTCTGGGATGTTGAAACAGGTACATGCAAGCACACATTTGGGAGTCGTGACTTCGTTGTCAGCTCATGTGCCTGGTTTCCCAACTCAAAGCATATTGTTTGTGGCAGTTCTGACGCTGAAAAGGGCATCTGCATGTGGGACTGTGATGGAAACGAGCTAAAAGCATGGAGAGGAGTGAGGATGCCCAAAATTGTAGATCTCGCTGTTACTCCAGATGGAGAGTATCTTATCACTATATTCTTGGATAAAGAGATTCGGATTTTGCATATGGGATCGAGTGTGGAGCGAGTCATTTCAGAGGAGCACCCAATCACATCCCTTTCAGTTTCAGGAGATAGTAAGTTCTTCATTGTCAATCTAAACAGCCAGGAGATTCATTTGTGGGATGTAGCTGGGAAATGGGATAAGCCATTGAAGTATATGGGCCATAAGCAACACAAATATGTGATAAGGTCATGCTTTGGCGGATTGAATAGCACATTTATAGCCAGTGGTAGCGAGAATTCACAGGTATACATTTGGAACCGCCGGAACTCAAGGCCATTAGAGGTTTTGTCTGGACATTCAATGACCGTGAATTGTGTGAGCTGGAACCCTAGAAGACCCCAAATGTTGGCATCAGCAAGTGATGATTATACAATTCGTATCTGGGGACCCGGCTTACCAAAAACGAGTGCAACTTGA 1671 0.4171 MKQENHDCSLRNIQFWNSEDTALRVKLDVVKFSNILLMENSSEVLGSKGLIKKHEFVRIIIQCLYALGYSKSASCLELESGISFKSAEFQLLEAQILNGNWDGCISTLNLINDMMDETRESAMFLVLRQCLLEYLSCGQDALALDVLRKQVSALHVDKCKVHSLANSMLSLKDTELDLIDGTIIHDLRRKLLTDLEKLFPPPIAVPERRLEHLVETTVTAWIDSCMYHSSSNPVSLYEDHCCGRDEIPTETTQILSGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVLEDGKLTLKYTLQGHQRAVSFVAWSPDDTKLLTCGNTEVLKLWDVETGTCKHTFGSRDFVVSSCAWFPNSKHIVCGSSDAEKGICMWDCDGNELKAWRGVRMPKIVDLAVTPDGEYLITIFLDKEIRILHMGSSVERVISEEHPITSLSVSGDSKFFIVNLNSQEIHLWDVAGKWDKPLKYMGHKQHKYVIRSCFGGLNSTFIASGSENSQVYIWNRRNSRPLEVLSGHSMTVNCVSWNPRRPQMLASASDDYTIRIWGPGLPKTSAT 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2964 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 341 IPR001680 GO:0005515
Glsi02g2964 556 Gene3D - 244 549 IPR015943 GO:0005515
Glsi02g2964 556 SMART Lish 52 84 IPR006594 GO:0005515
Glsi02g2964 556 PANTHER WD REPEAT PROTEIN 26-RELATED 39 548 - -
Glsi02g2964 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 288 IPR001680 GO:0005515
Glsi02g2964 556 FunFam WD repeat-containing protein 26 homolog 242 547 - -
Glsi02g2964 556 SUPERFAMILY WD40 repeat-like 247 546 IPR036322 GO:0005515
Glsi02g2964 556 SMART WD40_4 378 418 IPR001680 GO:0005515
Glsi02g2964 556 SMART WD40_4 335 376 IPR001680 GO:0005515
Glsi02g2964 556 SMART WD40_4 248 287 IPR001680 GO:0005515
Glsi02g2964 556 SMART WD40_4 507 547 IPR001680 GO:0005515
Glsi02g2964 556 SMART WD40_4 462 504 IPR001680 GO:0005515
Glsi02g2964 556 SMART WD40_4 293 332 IPR001680 GO:0005515
Glsi02g2964 556 SMART WD40_4 420 458 IPR001680 GO:0005515
Glsi02g2964 556 Pfam WD domain, G-beta repeat 251 287 IPR001680 GO:0005515
Glsi02g2964 556 Pfam WD domain, G-beta repeat 510 546 IPR001680 GO:0005515
Glsi02g2964 556 Pfam WD domain, G-beta repeat 336 376 IPR001680 GO:0005515
Glsi02g2964 556 Pfam WD domain, G-beta repeat 470 504 IPR001680 GO:0005515
Glsi02g2964 556 Pfam WD domain, G-beta repeat 297 332 IPR001680 GO:0005515
Glsi02g2964 556 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 85 142 IPR006595 -
Glsi02g2964 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 514 546 IPR001680 GO:0005515
Glsi02g2964 556 CDD WD40 252 546 - -
Glsi02g2964 556 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 288 - -
Glsi02g2964 556 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 514 556 - -
Glsi02g2964 556 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 300 336 - -
Glsi02g2964 556 ProSiteProfiles LIS1 homology (LisH) motif profile. 52 84 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2964 Glsi-ChrGlsi02 78405382 78410925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2964 253 406 Miscellaneous Gene Families AT5G08390 29.221 2.30e-15 77.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2964 02 78405382 78410925 Glsi02g2964 02 78405382 78410925 ECH