Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2930 ATGGTGGGTATAATCTCCTTGGTGACAGGGTGGCCTGGCCCAAGCGGGTTTGGATCTGCTTCAACCGCAGAGCAGGTTACCGAAGGGATTGATGCCACCAATCTCACTGCTATTGTCACAGGAGGAGCAAGCGGTATTGGGTTGGAGACAGCACGAGTTTTAGCCCTTCGAAAGGCTCATGTCATCATTGCTGCGAGGAACGTGGAGGCTGCAAAGGAAGCTAAACAAGTTATTCTACAGGAAAACGAGTCGGCTCGAGTGGATATACTAAAGCTTGACCTCTGCTCCGTCAAGTCTGTCAGAGCATTTGCTGATAATTTCTTGGCACTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGTGTCATGTTCTGCCCCTACCAGCTCACAGAGGATGGGATTGAGATGCAGTTTGCAACAAATCATCTTGGTCATTTCCTCTTGACAAACCTTCTTCTTGACAAAATGAAGCAAACTGCAAAAGACAGTGGCATGGAGGGCAGGATTGTGAATTTGTCATCAGTTGCTCACACCTACACTTACGAAGAGGGGATTCGATTTGAAAATATCAATGATCAAATTGGTTACTCTGACAAAAAGGCATATGGTCAGTCCAAATTAGCCAACATATTGCACGCAAATGAGCTTTCTCGTAGCCTGCAGGAAGAGGGTGTGAACATTACAGCCAACTCAGTCCATCCAGGACTAATTATGACTCCTCTTATGAGACATTCTTCCTTCCTTATGAATTTTCTCAAGATGTTCACCTTTTACATGTGGAAGCGTGTTCCACAGGGAGCAGCCACAACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTATCTGGGAAGTACTTTCTGGATTGCAATGAGTTTCAACCAAGTGCATTTGCCACAAACCAACTGTTAGGGAAGAAACTCTGGGATTTTAGCAACAAGTTGATCAAATCAGTTTTGAAAGACTGA 972 0.4475 MVGIISLVTGWPGPSGFGSASTAEQVTEGIDATNLTAIVTGGASGIGLETARVLALRKAHVIIAARNVEAAKEAKQVILQENESARVDILKLDLCSVKSVRAFADNFLALDLPLNILINNAGVMFCPYQLTEDGIEMQFATNHLGHFLLTNLLLDKMKQTAKDSGMEGRIVNLSSVAHTYTYEEGIRFENINDQIGYSDKKAYGQSKLANILHANELSRSLQEEGVNITANSVHPGLIMTPLMRHSSFLMNFLKMFTFYMWKRVPQGAATTCYVALHPSVKGVSGKYFLDCNEFQPSAFATNQLLGKKLWDFSNKLIKSVLKD 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2930 323 Gene3D - 25 321 - -
Glsi02g2930 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Glsi02g2930 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Glsi02g2930 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Glsi02g2930 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Glsi02g2930 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Glsi02g2930 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Glsi02g2930 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Glsi02g2930 323 Pfam short chain dehydrogenase 36 183 IPR002347 -
Glsi02g2930 323 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Glsi02g2930 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Glsi02g2930 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2930 Glsi-ChrGlsi02 78191633 78194296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2930 38 296 Acyl Lipid Metabolism Gene Families AT3G55310 26.909 2.19e-08 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2930 02 78191633 78194296 Glsi11g0834 11 5262104 5264085 CCT
Glsi02g2930 02 78191633 78194296 Glsi02g2930 02 78191633 78194296 ECH