Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2814 ATGATCAACGCACCCAACGGTATGATATCCACGTCTTCGGCCGCTACGGCACAATCCCCTGGCCTCAAGACTTATTTTAAGACCCCTGAAGGTCGCTACAAGCTTCACTACGAGAAGACACACCCTTCCACTCTCCTTCACTATGCCCATGGCAAAACCGTCTCTCAGGTAACTCTTGCACATCTAAAGGACAAGCCAGCACCTTCAACACCGACTGCTCCACCATCAAGTTTCAGTGCCAGCAGTGGGGTACGGTCAGCAGCTGCTAGATTGCTGGGAGGAGGCAATGGAAGCCGAGCACTTAGTTTTGTTGGAGGGAATGGTAGCAGCAAGAATATTGGAGGAAACAGTAGGATTGGTTCAATTGGTGCCTCCAGTTCAAGTAATTTAATGGCTAGTTCAAATTTTGATGGGAAAGGGACTTACTTGATTTTCAATGTTGGTGATGCAATTTTCATCAGTGATTTGAATTCTCAAGACAAGGATCCCATAAAGTCTATTCACTTTAGCAATTCCAATCCTGTGTGCCACGCATTCGATCAGGAAGCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACACTGGCGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAGAAGCTTGTAGGAGCTCAGCATTACAACAAAGATGGTTCTGTCAATAACAGTCGTTGTACTTGTATTGCATGGATCCCTGGAGGTGATGGTGCTTTTGTTGTTGCTCATGCTGATGGAAATCTGTATGTATATGAAAAGAGCAAGGATGGTGCTGGCGATTCTTCATTCCCAGTTATTAAAGATCAAATGCAATTTTCTGTTGCCCATGCACGTAATAGTAAGAGTAATCCAGTAGCCAGATGGCATATATGCCAGAGTTCAATTAACAGCATTTCTTTCTCAACTGATGGCGCATACTTAGCAACTGTTGGAAGAGATGGCTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGTGGGAAAAGTTATTATGGTGCTCTGTTATGTTGTGCTTGGAGCATGGATGGAAAATATATTTTGACTGGAGGAGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGGCACAACTCGTGGGTCAGTGGAGTGGCTTTTGATTCATATTGGACCTCACCAAATTCAAATGACAATACGGAGACTGTTATGTATCGGTTTGGCTCTGTCGGCCAGGATACGCAATTGCTTCTATGGGACCTGGAAATGGATGAGATTGTAGTACCATTGCGGCGTCCGCCTGGTGGATCCCCCACTTACAGTGCTGGAAGCCAGTCATCCCACTGGGACAGTGTTATCCCATTGGGTATGCTGCAACCTGCTCCAAGCATGCGTGATGTTCCAAAAATCTCTCCCCTGGTTGCTCATCGTGTGCATACAGAACCTCTCTCAGGCTTGGTATTTACCCAGGAATCTGTACTTACCGCCTGTCGGGAGGGCCACATAAAGATCTGGATGAGACCTGGGATTTCTGAGAGCCAACCAAGCAACTCTGAAACCTTGTTAGCTACGAGCCTGAAGGAGAAAACACCACTTTCAGGCAAGGTTAGCAATACCAGTTACAAACAATGA 1638 0.4548 MINAPNGMISTSSAATAQSPGLKTYFKTPEGRYKLHYEKTHPSTLLHYAHGKTVSQVTLAHLKDKPAPSTPTAPPSSFSASSGVRSAAARLLGGGNGSRALSFVGGNGSSKNIGGNSRIGSIGASSSSNLMASSNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQEAKDGHDLLIGLNTGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTCIAWIPGGDGAFVVAHADGNLYVYEKSKDGAGDSSFPVIKDQMQFSVAHARNSKSNPVARWHICQSSINSISFSTDGAYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWTSPNSNDNTETVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSAGSQSSHWDSVIPLGMLQPAPSMRDVPKISPLVAHRVHTEPLSGLVFTQESVLTACREGHIKIWMRPGISESQPSNSETLLATSLKEKTPLSGKVSNTSYKQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2814 545 PANTHER WD REPEAT PROTEIN 11 524 - -
Glsi02g2814 545 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 376 IPR001680 GO:0005515
Glsi02g2814 545 MobiDBLite consensus disorder prediction 526 545 - -
Glsi02g2814 545 Gene3D - 11 515 IPR015943 GO:0005515
Glsi02g2814 545 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 325 IPR001680 GO:0005515
Glsi02g2814 545 Pfam WD domain, G-beta repeat 342 367 IPR001680 GO:0005515
Glsi02g2814 545 Pfam WD domain, G-beta repeat 294 325 IPR001680 GO:0005515
Glsi02g2814 545 SMART WD40_4 211 257 IPR001680 GO:0005515
Glsi02g2814 545 SMART WD40_4 328 367 IPR001680 GO:0005515
Glsi02g2814 545 SMART WD40_4 370 422 IPR001680 GO:0005515
Glsi02g2814 545 SMART WD40_4 286 325 IPR001680 GO:0005515
Glsi02g2814 545 SMART WD40_4 471 508 IPR001680 GO:0005515
Glsi02g2814 545 SUPERFAMILY WD40 repeat-like 116 507 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2814 Glsi-ChrGlsi02 77355120 77362044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2814 297 429 Miscellaneous Gene Families AT5G08390 22.556 2.98e-07 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2814 02 77355120 77362044 Glsi02g2814 02 77355120 77362044 ECH