Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2778 ATGGAAGCTGCGAAGAGTTTGTTCTGTTCATCTTCACCGCTTCCATCAAGAACTAACCACTGGAGCGCTCTTCCCTCGTCTTCTTCACCTTCTTCTACTTCAGTTTTGATGTTTCATGAACATGCCGCTCCTGCAGTTACCTCCAGGTCTGCTAGTTTTGCAGCCCAGCATTTTCCTACATCAGTTCTTTTACAAGAGCAGCGTGATGATTATAAGCCTATACTGCAGATGTGTAAGGAAGAAAGGACATCCCAGGCAACATTAAATACAAGGCAGATGGATATGGCCTCAGTTCGTCAATACGTTAACCCTGGAAATGCTGATCAGTTAGTGCATGACTTTAAGCAGCAGTTGCAAATTTGGCCTCGTTTACAGAACTTGTTGACTTCCTTACCAACGGGGGAAATTGCAAAATCTTCAACTCTGCAGACTGATACTGTTGACTTAGAGAAGCCTGCAGAAGGTGAACAGTTTGATGCTGTTGCTCTTGCTAAGCAAGCCTTGTCGGCCTCAAAAGAAGCAGCCTCAGTGGCTGAAGACTTGAAATCAATCAAAGATGAAGATGATGATTCACTTTCTTTTGGTCTGGCCTCCACAAGGTTGTGTGACTCTTCACTTGGAAAGAATAAAATTGTGAGGTCAACACGACTTTTAGAGAGACAATCAAAGAAGAGAAAAATGCCAAAGTCAAAAGTTCAATATGAAGAAAGCTATCTTACTAAACGGGCAGATGTACAGGGAAGGTTACATGTAGAAAAGAAGATAAATCAAGGGTTTGATCAAAATGACCCCCTGCGCTTGTTCTTGTGGGGTCCTGAAACAAAGCAACTTTTGACGCTTGAAGAAGAATCTCAATTGATTGTTCAGCTACAGGATTTATTGAGATTAGAAGAAGTGAAGAGCAGGCTTCAATCTCAATTTGGCCGGGAACCAACTTTCGCTGAATGGGCTGAAGGTGCGGGGCTTAGCTGTCCAGCCCTGCAGTTACAGCTTCATTCTGGTAACAGCAGCAGGGAGAAGCTGATTTATGCCAATTTACGCATGGTGGTTCATATTGCTAAACATTATCAGGGGCGTGGTCTTAGCTTTCAGGACTTAATGCAGGAGGGAAGTATGGGTCTTATGAAGAGTGTTGAAAAGTTTAAACCCCAAGCTGGTTGCCGGTTTGGTACTTATGCATACTGGTGGATAAGGCAAACAATAAGGAAGGCCATATTTCAACATTCCAGGACAATCCGTTTGCCGGAGAATGTATATACCTTTTTGGGCAAGGTAATGGAGGCAAAGAAATTGTACATTCAAGAAGGAAATCTTCGCCCTACCAAAGAAGAATTAGCAAGAAGGGTAGGAATTACAGTAGACAAGTTAGAAAAGTTGTTTTTTGTTGCAAGAATTCCACTTTCGATGCAACAAACTGTGTGGGCAGATCAAGATACCACTTTCCAGGAGATTACTGCAGACTCTGCAATTGAGATCCCAGATGTGAGTGTTGCAAAACAGCTGATGAGGCTGCATGTGCGAAACCTCTTAAATATCTTAAGCCCAAAAGAGAGGAAAATAATCAGGCTAAGATTTGGTATTGAAGATGGCAAACAGAAATCATTATCAGAAATTGGAAACACATTTGGTTTGTCTAAGGAAAGGATTCGGCAGTTGGAGAGCCGAGCATTGTACAAGCTCAAGCAGTGCCTTGGCAGCCAAGGACTTGATGCATATGTAGACTTGCTTGTATAG 1734 0.4262 MEAAKSLFCSSSPLPSRTNHWSALPSSSSPSSTSVLMFHEHAAPAVTSRSASFAAQHFPTSVLLQEQRDDYKPILQMCKEERTSQATLNTRQMDMASVRQYVNPGNADQLVHDFKQQLQIWPRLQNLLTSLPTGEIAKSSTLQTDTVDLEKPAEGEQFDAVALAKQALSASKEAASVAEDLKSIKDEDDDSLSFGLASTRLCDSSLGKNKIVRSTRLLERQSKKRKMPKSKVQYEESYLTKRADVQGRLHVEKKINQGFDQNDPLRLFLWGPETKQLLTLEEESQLIVQLQDLLRLEEVKSRLQSQFGREPTFAEWAEGAGLSCPALQLQLHSGNSSREKLIYANLRMVVHIAKHYQGRGLSFQDLMQEGSMGLMKSVEKFKPQAGCRFGTYAYWWIRQTIRKAIFQHSRTIRLPENVYTFLGKVMEAKKLYIQEGNLRPTKEELARRVGITVDKLEKLFFVARIPLSMQQTVWADQDTTFQEITADSAIEIPDVSVAKQLMRLHVRNLLNILSPKERKIIRLRFGIEDGKQKSLSEIGNTFGLSKERIRQLESRALYKLKQCLGSQGLDAYVDLLV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2778 577 ProSitePatterns Sigma-70 factors family signature 1. 365 378 IPR000943 GO:0003700|GO:0006352|GO:0006355
Glsi02g2778 577 Pfam Sigma-70 region 3 422 493 IPR007624 GO:0003700|GO:0006352|GO:0006355
Glsi02g2778 577 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 261 411 IPR013325 GO:0003700|GO:0006352|GO:0006355
Glsi02g2778 577 ProSitePatterns Sigma-70 factors family signature 2. 534 560 IPR000943 GO:0003700|GO:0006352|GO:0006355
Glsi02g2778 577 PIRSF Sigma_factor_SigC 1 577 IPR016262 -
Glsi02g2778 577 NCBIfam sigma-70 family RNA polymerase sigma factor 337 564 IPR014284 GO:0003700|GO:0006352|GO:0006355
Glsi02g2778 577 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 414 487 IPR013324 -
Glsi02g2778 577 Gene3D - 414 491 IPR036388 -
Glsi02g2778 577 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 474 573 IPR013324 -
Glsi02g2778 577 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 158 573 - -
Glsi02g2778 577 PRINTS Major sigma-70 factor signature 389 397 IPR000943 GO:0003700|GO:0006352|GO:0006355
Glsi02g2778 577 PRINTS Major sigma-70 factor signature 549 560 IPR000943 GO:0003700|GO:0006352|GO:0006355
Glsi02g2778 577 PRINTS Major sigma-70 factor signature 534 549 IPR000943 GO:0003700|GO:0006352|GO:0006355
Glsi02g2778 577 PRINTS Major sigma-70 factor signature 365 378 IPR000943 GO:0003700|GO:0006352|GO:0006355
Glsi02g2778 577 PRINTS Major sigma-70 factor signature 513 525 IPR000943 GO:0003700|GO:0006352|GO:0006355
Glsi02g2778 577 MobiDBLite consensus disorder prediction 1 26 - -
Glsi02g2778 577 Gene3D - 126 410 - -
Glsi02g2778 577 Pfam Sigma-70, region 4 509 562 IPR007630 GO:0003700|GO:0006352|GO:0006355
Glsi02g2778 577 MobiDBLite consensus disorder prediction 9 26 - -
Glsi02g2778 577 Pfam Sigma-70 region 2 342 410 IPR007627 GO:0003700|GO:0006352|GO:0006355
Glsi02g2778 577 Gene3D - 496 576 IPR036388 -
Glsi02g2778 577 CDD Sigma70_r4 503 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2778 Glsi-ChrGlsi02 77139794 77144259 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0984 11 6189387 6212731 Glsi02g2778 02 77139794 77144259 CCT
Glsi02g2778 02 77139794 77144259 Glsi02g2778 02 77139794 77144259 ECH