Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2581 ATGGAGAAGACGTCGAGGGAAAGTGGGTTGTGTCAGATGGCATGGATGGAAAACAATGCAGGGAATGGGAGAGAAAGGGAATTAGTGGGAGATAATGGTTTCTTGAAAGTGTCACAGCCTTCTATTAATAGTAGTGGCTCTGTTGGGGATAGTGATCCAGCACACAAGAGATGTGAAGGGAAAGACAATCTTTCTTATGCCAACATCCTACGTTCAAGGAACAAATTTGTTGATGCTCTTGCTTTATATGAGCACATCCTGGAGAATGATAATGGAAATGTAGAAGCTCTCATCGGAAAAGGGATATGCCTGCAGATGCAGAACATGGGAAGGCTTGCTTTTGACAGTTTTGCTGAAGCTATCAAGTTGGATCCTCAAAATGCTTGTGCCCTTACGCATTGTGGTATTTTGTATAAAGAAGAAGGTCGCTTGGTGGAGGCAGCTGAGTCATATCAGAAGGCTTTACGAGTGGATCCTTCATACAAAGCAGCTGCTGAATGCCTTGCCATTGTGTTAACAGATATTGGTACCAACATAAAACTTGCTGGAAACACTCAGGAGGGAATTCAAAAATATTATGAAGCTCTCAAAATAGATCCACACTATGCTCCAGCATATTATAACCTTGGTGTTGTCTATTCTGAAATGATGCAATATGACATGGCCCTTGGTTTCTACGAGAAGGCTGCATCAGAGAGGCCAATGTATGCTGAAGCATATTGCAATATGGGTGTAATTTATAAAAACCGTGGTGATTTGGAAGCAGCTATTGCTTGCTACGAGAGGTGTTTAGCTGTTTCACCCAACTTTGAGATTGCAAAGAATAATATGGCTATTGCCTTGACTGATTTGGGAACAAAGGTTAAATTGGAAGGGGACATCAATCAAGGTGTGGACTATTACAAGAAAGCTTTGTATTATAATTGGCATTATGCTGATGCTATGTATAATCTTGGGGTTGCATATGGTGAGATGCTTAAGTTTGACATGGCTATTGTATTCTATGAACTTGCTTTCCACTTTAATCCTCATTGTGCGGAAGCTTGCAACAATCTAGGGGTTATATATAAAGATCGAGACAACCTTGATAAAGCTGTAGAGTGTTACCAGCTTGCTTTGTCAATTAAACCTAACTTTTCACAATCATTGAATAATCTTGGTGTTGTCTACACTGTCCAGGGTAAAATGGATGCTGCTGCAAGTATGATTGAGAAAGCTATCATTGCAAATCCGACATATGCAGAAGCATACAATAACTTAGGAGTTCTTTATAGGGATGCTGGTGATATCACCCTGGCAGTTAATGCTTATGAGCAATGTCTTAAGATAGATCCTGACTCTCGAAATGCTGGCCAGAACCGCTTGCTTGCATTGAATTACATAGATGAAGGACAGGATGATAAACTTTTTGAAGCTCACAGGGACTGGGGTAGGCGCTTTATGAGATTATATTCACAGTACACATCATGGGATAACCCAAAAGATCCTGAACGACCTCTTGTCATAGGATATGTATCTCCTGATTATTTTACGCATTCTGTGTCATATTTCATAGAAGCTCCCCTTGTCTATCACGACTACACCAAATATAAAGTGATAGTTTATTCAGCAGTTGTCAAGGCAGATGCAAAAACCATTAAATTTAGGGAGAAAGTCTTACAAAAGGGTGGGATTTGGAAAGATATTTATGGGATTGATGAAAAGAAGGTTGCCAACATGGTTAGAGAAGACCAGGTTGACATTCTGGTAGAACTTACTGGTCATACTGCAAACAATAAGTTAGGAATGATGGCATGTCGACCTGCACCTGTTCAGGTGACTTGGATCGGTTATCCTAATACAACTGGCTTGCCTACAATTGATTATAGAATAACTGATTCACTGGCAGACCCTCCTGAAACAAAGCAGAAGCATATTGAGGAGTTAGTTCGATTACCAGAATGCTTTCTTTGTTATACACCTTCCGTTGAGGCTGGGCCTGTTTGTCCTACTCCTGCTCTTTCCAATGGCTTCATTACATTTGGTAGCTTTAACAATCTTGCGAAGATTACCCCTAAAGTTTTGCAAGTCTGGGCAAGGATATTATGTGCAGTTCCAAACTCTCGCCTTGTGGTAAAATGCAAACCATTTTGTTGTGATAGTGTGAGACAGAGATTTCTTTCAACACTGGAGCAGTTAGGTTTGGAGCCACTGCGTGTTGATCTTCTACCTCTAATTCTTCTTAACCATGATCATATGCAAGCATATTCTCTGATGGACATCAGTTTGGACACATTTCCTTATGCTGGAACAACCACAACATGCGAATCTTTATACATGGGAGTTCCATGTGTCACTATGGCTGGTTCTGTACATGCACACAATGTTGGTGTTAGCCTTCTTAGCAAAGTTGGTTTGGGGCATTTGATTGCCAGAAATGAAGATGAATACGTCCAATTGGCTCTGCAGTTGGCCTCTGACCTTTCAGCACTACAAAATTTGAGAACGAGTCTACGAGAACTGATGTCCAAATCCCCTCTCTGTGATGGAGCAAATTTTATCCTTGGTCTAGAGTTGACATTTAGGAACATGTGGCGCAGATATTGTAAAGGAGATGTTCCATCTTTAAAGCGCATGGAATTGTTGCAGCAGCCTGCCACCATTGGTGACCCATCTAGTAAGACTTCTGAGCCAACAAAGATAGCAAACTCAAGGGAGGGCAGTCCTGGATCTGTCAAGACCAATGGATTTAATTCAATGCAACCATCTAAGCTTAATATCCGCAATCGCGAAGAAAATGGGGTGTTACTGAATCACTATAGTAAACAAGGAAAGGTGGATTCTAGCTGA 2829 0.41 MEKTSRESGLCQMAWMENNAGNGRERELVGDNGFLKVSQPSINSSGSVGDSDPAHKRCEGKDNLSYANILRSRNKFVDALALYEHILENDNGNVEALIGKGICLQMQNMGRLAFDSFAEAIKLDPQNACALTHCGILYKEEGRLVEAAESYQKALRVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDMALGFYEKAASERPMYAEAYCNMGVIYKNRGDLEAAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVDYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDITLAVNAYEQCLKIDPDSRNAGQNRLLALNYIDEGQDDKLFEAHRDWGRRFMRLYSQYTSWDNPKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYTKYKVIVYSAVVKADAKTIKFREKVLQKGGIWKDIYGIDEKKVANMVREDQVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHIEELVRLPECFLCYTPSVEAGPVCPTPALSNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRQRFLSTLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLGHLIARNEDEYVQLALQLASDLSALQNLRTSLRELMSKSPLCDGANFILGLELTFRNMWRRYCKGDVPSLKRMELLQQPATIGDPSSKTSEPTKIANSREGSPGSVKTNGFNSMQPSKLNIRNREENGVLLNHYSKQGKVDSS 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2581 942 Pfam Tetratricopeptide repeat 135 160 IPR019734 GO:0005515
Glsi02g2581 942 ProSiteProfiles TPR repeat profile. 346 379 IPR019734 GO:0005515
Glsi02g2581 942 ProSiteProfiles TPR repeat profile. 312 345 IPR019734 GO:0005515
Glsi02g2581 942 SMART sel1 312 343 IPR006597 -
Glsi02g2581 942 SMART sel1 203 234 IPR006597 -
Glsi02g2581 942 SMART sel1 237 268 IPR006597 -
Glsi02g2581 942 SMART sel1 346 377 IPR006597 -
Glsi02g2581 942 SMART sel1 414 445 IPR006597 -
Glsi02g2581 942 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY 278 476 - -
Glsi02g2581 942 SUPERFAMILY TPR-like 62 286 IPR011990 GO:0005515
Glsi02g2581 942 ProSiteProfiles TPR repeat profile. 380 413 IPR019734 GO:0005515
Glsi02g2581 942 Gene3D Tetratricopeptide repeat domain 386 502 IPR011990 GO:0005515
Glsi02g2581 942 ProSiteProfiles TPR repeat profile. 169 202 IPR019734 GO:0005515
Glsi02g2581 942 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 47 885 - -
Glsi02g2581 942 SMART tpr_5 380 413 IPR019734 GO:0005515
Glsi02g2581 942 SMART tpr_5 312 345 IPR019734 GO:0005515
Glsi02g2581 942 SMART tpr_5 278 311 IPR019734 GO:0005515
Glsi02g2581 942 SMART tpr_5 94 127 IPR019734 GO:0005515
Glsi02g2581 942 SMART tpr_5 346 379 IPR019734 GO:0005515
Glsi02g2581 942 SMART tpr_5 60 93 IPR019734 GO:0005515
Glsi02g2581 942 SMART tpr_5 237 270 IPR019734 GO:0005515
Glsi02g2581 942 SMART tpr_5 169 202 IPR019734 GO:0005515
Glsi02g2581 942 SMART tpr_5 128 161 IPR019734 GO:0005515
Glsi02g2581 942 SMART tpr_5 414 447 IPR019734 GO:0005515
Glsi02g2581 942 SMART tpr_5 203 236 IPR019734 GO:0005515
Glsi02g2581 942 ProSiteProfiles TPR repeat region circular profile. 237 269 - -
Glsi02g2581 942 Gene3D Glycogen Phosphorylase B; 655 841 - -
Glsi02g2581 942 ProSiteProfiles TPR repeat profile. 237 270 IPR019734 GO:0005515
Glsi02g2581 942 Gene3D Tetratricopeptide repeat domain 174 238 IPR011990 GO:0005515
Glsi02g2581 942 Gene3D Tetratricopeptide repeat domain 312 385 IPR011990 GO:0005515
Glsi02g2581 942 Gene3D Tetratricopeptide repeat domain 239 309 IPR011990 GO:0005515
Glsi02g2581 942 MobiDBLite consensus disorder prediction 878 927 - -
Glsi02g2581 942 SUPERFAMILY TPR-like 383 813 IPR011990 GO:0005515
Glsi02g2581 942 MobiDBLite consensus disorder prediction 879 921 - -
Glsi02g2581 942 ProSiteProfiles TPR repeat profile. 414 447 IPR019734 GO:0005515
Glsi02g2581 942 Pfam Tetratricopeptide repeat 381 445 - -
Glsi02g2581 942 ProSiteProfiles TPR repeat region circular profile. 414 446 - -
Glsi02g2581 942 Pfam Tetratricopeptide repeat 203 234 IPR001440 GO:0005515
Glsi02g2581 942 Pfam Tetratricopeptide repeat 237 270 IPR001440 GO:0005515
Glsi02g2581 942 Pfam Tetratricopeptide repeat 346 379 IPR001440 GO:0005515
Glsi02g2581 942 Gene3D - 503 654 - -
Glsi02g2581 942 Gene3D Tetratricopeptide repeat domain 59 173 IPR011990 GO:0005515
Glsi02g2581 942 ProSiteProfiles TPR repeat region circular profile. 346 378 - -
Glsi02g2581 942 SUPERFAMILY TPR-like 277 449 IPR011990 GO:0005515
Glsi02g2581 942 ProSiteProfiles TPR repeat profile. 203 236 IPR019734 GO:0005515
Glsi02g2581 942 ProSiteProfiles TPR repeat profile. 128 161 IPR019734 GO:0005515
Glsi02g2581 942 ProSiteProfiles TPR repeat region circular profile. 203 234 - -
Glsi02g2581 942 Pfam Glycosyl transferase family 41 494 650 IPR029489 -
Glsi02g2581 942 Pfam Glycosyl transferase family 41 667 846 IPR029489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2581 Glsi-ChrGlsi02 75606707 75626034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2581 222 918 Glycosyltransferase AT3G11540 64.562 0.0 909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2581 02 75606707 75626034 Glsi02g2581 02 75606707 75626034 ECH