Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2564 ATGGCAGCCGCTTCTTCAGTCTCTGCAGTCGCCAAAAGGCTTGAAGGAAAAGTAGCCTTAATAACCGGAGGAGCCAGTGGGATCGGGAAACGCACTTCACAAGTGTTTGCCCAGCACGGAGCCAAAGTTGTAATTGGAGACGTCCAAGACGAACTGGGCCATTCTGTTGCCCAATCCATAGGCCCATCCAATTGCATATACGTGAATTGTGATGTCACCGACGAGGCCCAGGTAAAAAATGCGGTGGACACTGCGGTCAGAGCCTATGGGAAGTTAGACATAATGTTCAACAACGCAGGCATTGTCGACCCCAACAAGCCCAAAATCATCGACAACCAGAAGGCTGATTTCGAGCGCGTGCTGAGCATCAACGTGACGGGCGTGTTCCTGGGCATAAAGCACGCGGCGCAGGCCATGATTGGGGCTCGCAGCGGTAGCATAATCTCGACGGCTAGCATAAGCTCGTACGTGGGGGGTGCGGCTTCACATGCGTATTGTTGCGCCAAGCATGCGGTGGTGGGATTGACTAAAAATGCAGCAGTGGAGCTAGGGCAGTTTGGGATAAGGGTGAATTGCTTGTCACCCTACGCTTTAGCGACGCCCTTAGCTACCAAGTTTGTTGGGGTTAGTGACGAAGAGCTTGAGAAAGTGATGAACTCGCTGGCTAATCTAAAGGGCGTGACACTCAAGGCTGAGGATGTGGCCAATGCAGCAGTCTATATGGCTAGTGATGAGTCAAGGTACGTGAGCGGGCAGAATTTGCTCATAGATGGGGGTTTCAGTATTGTTAACCCCTCTTTTCACATGTTTCAGTATGCTGAGTCTTAA 828 0.5145 MAAASSVSAVAKRLEGKVALITGGASGIGKRTSQVFAQHGAKVVIGDVQDELGHSVAQSIGPSNCIYVNCDVTDEAQVKNAVDTAVRAYGKLDIMFNNAGIVDPNKPKIIDNQKADFERVLSINVTGVFLGIKHAAQAMIGARSGSIISTASISSYVGGAASHAYCCAKHAVVGLTKNAAVELGQFGIRVNCLSPYALATPLATKFVGVSDEELEKVMNSLANLKGVTLKAEDVANAAVYMASDESRYVSGQNLLIDGGFSIVNPSFHMFQYAES 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2564 275 Gene3D - 3 272 - -
Glsi02g2564 275 PRINTS Glucose/ribitol dehydrogenase family signature 165 184 IPR002347 -
Glsi02g2564 275 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Glsi02g2564 275 PRINTS Glucose/ribitol dehydrogenase family signature 139 155 IPR002347 -
Glsi02g2564 275 PRINTS Glucose/ribitol dehydrogenase family signature 224 244 IPR002347 -
Glsi02g2564 275 PRINTS Glucose/ribitol dehydrogenase family signature 186 203 IPR002347 -
Glsi02g2564 275 PRINTS Glucose/ribitol dehydrogenase family signature 90 101 IPR002347 -
Glsi02g2564 275 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 10 264 - -
Glsi02g2564 275 Pfam Enoyl-(Acyl carrier protein) reductase 23 261 - -
Glsi02g2564 275 FunFam Short-chain dehydrogenase reductase 3 265 - -
Glsi02g2564 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 IPR002347 -
Glsi02g2564 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 IPR002347 -
Glsi02g2564 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 IPR002347 -
Glsi02g2564 275 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 263 IPR036291 -
Glsi02g2564 275 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 152 180 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2564 Glsi-ChrGlsi02 75521517 75522620 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2564 14 270 Acyl Lipid Metabolism Gene Families AT1G63380 30.075 7.16e-27 104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2564 02 75521517 75522620 Glsi02g2564 02 75521517 75522620 ECH