Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2548 ATGGCTTCTCCACACATTCTCTGTCTACTCTGTCTTCTCTCTGTAACCTTCACTTCATCATTTGCATCCACACCCAACACCATCACTCTTTCTCTTTCACCCTTATTCGTCAAACATCCATCTTCAGATCCCTTTCGGACCCTTAAACTCGTTTCCTCTGCTTCTCTAACCAGAGCCCACCACCTCAAGCACCGCATATCCAAATCCAATTCTTCCCTTACCAAAACACCAGCATACCCCAAAAGCTATGGAGGATACTCTGTTAATCTCAATTTTGGAACACCACCTCAAACCTTCCCTTTCGTCTTGGACACGGGAAGTAGCCTGGTCTGGTTGCCCTGCTCCTCTCGTTATCTCTGTTCCAAATGCTCCTTCCCAAACATCGACTCAACAAAACTCCCCAAGTTTATTCCTAAGAATTCCTCCTCCGCCAAGTTCATAGGTTGCAAAAACCCAAAATGTGGATGGATTTTCGGTCCTGATGTTCAATCTCGATGCCAAGACTGCCAACCCGGTGCCCAGAACTGCTCCCAGATTTGTCCTGCTTATATGATTCAGTATGGTTTGGGCTCAACTGCTGGCGTCTTACTCTCAGAAAGTCTGGACTTTCCTGGGAAAATTGTATCTGATTTTCTCGTAGGGTGTTCTGTCATGTCGATCCGTCAACCAGCTGGAATCGCCGGGTTTGGCCGCGGGTTAGAATCGCTGCCCTCGCAGATGGGTATCAAGAGATTCTCGTACTGTTTGCAGTCTCACAGGTTCGATGATTCGCCCGAAAGCAGTGACCTCATTTTGCAGAGTGACTCCTCCGGCAACACCAAGACGGATGGCCTTAGCTACACTCCGTTTCAGAAAAACCTAGCTGCCAAAAATTCTGCATTCCGCGAGTACTATTACGTAACTCTTCGAAAAGTCATCGTGGGTGGCAAGCGAGTCAAGATTCCACACAAGCTTCTGGAGCCAGACTCAGATGGCAACGGGGGTTCAATAGTAGATTCTGGCTCCACCTTTACATTCATGGAAAGGCCTATTTTTGAGTTGGTGGCACAAGAATTCGAGAAACAGATGGCTAATTATACCAGAGCCAAGGACGTAGAAAGCCAATCTGGTTTGAGCCCCTGTTTCGACATTTCAACCGAGAAATCGGTATCTTTCCCGGAATTCACTTTCCAATTCAGAGGAGGTGCTAAAATGACATTGCCTTTAGAGAACTATTTCTCGTTGCTCGGAAAATCGCGGGTCGCGTGCTTGACGATCCTCTCTGACAATGCGGCCGGTCCGGCAGTGGCCGGCGGGCCGGCGTTAATTTTTGGTAACTATCAGCAGCAAAATTTCTATGTCGAATATGACTTGGAAAATGAGAGATTTGGATTTCGGCCTCAGAGTTGCAAAAAGGGCAATTAG 1404 0.4744 MASPHILCLLCLLSVTFTSSFASTPNTITLSLSPLFVKHPSSDPFRTLKLVSSASLTRAHHLKHRISKSNSSLTKTPAYPKSYGGYSVNLNFGTPPQTFPFVLDTGSSLVWLPCSSRYLCSKCSFPNIDSTKLPKFIPKNSSSAKFIGCKNPKCGWIFGPDVQSRCQDCQPGAQNCSQICPAYMIQYGLGSTAGVLLSESLDFPGKIVSDFLVGCSVMSIRQPAGIAGFGRGLESLPSQMGIKRFSYCLQSHRFDDSPESSDLILQSDSSGNTKTDGLSYTPFQKNLAAKNSAFREYYYVTLRKVIVGGKRVKIPHKLLEPDSDGNGGSIVDSGSTFTFMERPIFELVAQEFEKQMANYTRAKDVESQSGLSPCFDISTEKSVSFPEFTFQFRGGAKMTLPLENYFSLLGKSRVACLTILSDNAAGPAVAGGPALIFGNYQQQNFYVEYDLENERFGFRPQSCKKGN 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2548 467 PANTHER OS07G0603500 PROTEIN-RELATED 37 464 - -
Glsi02g2548 467 Pfam Xylanase inhibitor N-terminal 86 253 IPR032861 -
Glsi02g2548 467 Pfam Xylanase inhibitor C-terminal 298 459 IPR032799 -
Glsi02g2548 467 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 101 112 IPR001969 GO:0004190|GO:0006508
Glsi02g2548 467 FunFam Aspartic proteinase nepenthesin-2 59 263 - -
Glsi02g2548 467 ProSiteProfiles Peptidase family A1 domain profile. 86 459 IPR033121 -
Glsi02g2548 467 SUPERFAMILY Acid proteases 81 463 IPR021109 -
Glsi02g2548 467 Gene3D Acid Proteases 266 467 IPR021109 -
Glsi02g2548 467 FunFam Aspartyl protease family protein 269 466 - -
Glsi02g2548 467 CDD pepsin_A_like_plant 85 463 IPR034161 -
Glsi02g2548 467 Gene3D Acid Proteases 66 260 IPR021109 -
Glsi02g2548 467 PRINTS Pepsin (A1) aspartic protease family signature 435 450 IPR001461 GO:0004190|GO:0006508
Glsi02g2548 467 PRINTS Pepsin (A1) aspartic protease family signature 329 340 IPR001461 GO:0004190|GO:0006508
Glsi02g2548 467 PRINTS Pepsin (A1) aspartic protease family signature 92 112 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2548 Glsi-ChrGlsi02 75262659 75264062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2548 84 465 Miscellaneous Gene Families AT1G44130 24.574 4.02e-13 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2548 02 75262659 75264062 Glsi02g2548 02 75262659 75264062 ECH