Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2499 ATGGGCACCGTGGATTCTCTCGTCTATGGTGTCACTAAACCCTTCTTCCTCTACTTCACTACTCTTTTCTTCCTTTCCCTTCTACCATTCCACTCCGCATTGCCGCAAAACCCCACTCAGAAATTCTCTTCTTCAAGCTCTGGTCAGATAAACTCTAACTCCGTCCTTGTGGCTCTTCTCGATTCTCATTACACTGAGCTAGCTGAGCTTGTGGAGAAAGCGCTTCTCTTACAGAAACTCGAGGACACAGTGGGGATGCACAATATTACCATTTTTGCCCCCCGAAATGAAGCTCTGGAACGGCAGTTGGACCCCGAGTTTAAGCGATTCCTGCTTGAACCCGGGAACCTGAGGTCGTTACAGACCCTTTTGATGTATCACATTGTTCCCAAACGAATCCGGTCGAACGACTGGCCCAGTGGGAATTCTGGAGTTGTTCCGCACCAGACTTTGTCCAACGACCATGTGCATTTGATGAGTAAGGGTCCTGGGAAGAAGGTTGTTGGACTGGCCGAGCTTGTTCGTCCTGACGACGTCGATCGTCCCGACGGTGTGATTCACGGGATTGAGCGTTTGTTGATTCCACGATCGGTGCAGGAGGATTTCAACCGCAGGAGAAATTTGCGGGCAATCTCGGCTGTGCTACCGGAGGGTGCACCGGAGGTGGACCCCAGAACCCACCGGTTGAAGAAACCAGCCCCAGTACCAGCAGGGGCTCCGCCAGTATTGCCCATTTACGACGCAATGGCACCAGGTCCTTCACTGGCTCCGGCGCCGGCGCCCGGACCCGGTGGGCCTCGCCATCACTTCAATGGGGAGCGCCAGGTCAAGGACTTCATCCATACCTTGTTACATTACGGCGGGTACAATGAAATGGCAGATATTCTGGTCAATTTAACATCTTTAGCGACCGAGATGGGAAGGTTGGTCTCAGAGGGTTACGTCTTGACCGTGTTGGCTCCCAATGACGAGGCCATGGCGAAGCTCACCACAGACCAATTGAGTGAACCGGGTGCACCGGAGCAAATAATCTACTACCATATCATACCGGAGTATCAGACGGAGGAGAGTATGTACAATGCTGTGAGGAGGTTTGGGAAGGTTCGGTATGACACACTGCGGTTGCCGCACAAGGTTGTGGCTCAGGAGGCTGATGGGTCTGTGAAATTTGGGCAAGGTGAAGGGTCAGCGTATCTGTTCGATCCTGATATATATACAGATGGGAGAATTTCGGTGCAGGGTATTGATGGGGTTCTTTTCCCAGCGGAGGAGGAGCCAAAGACAGAGCGGAAAACACTGCCGGTTGTTAAAGTTGCCACCAAACCAAGAAGAGGGAAGTTGCTGGAAGTAGCCTGTAGCATGCTTGGAGCTTTTGGACGAGTCTGCTAA 1389 0.5227 MGTVDSLVYGVTKPFFLYFTTLFFLSLLPFHSALPQNPTQKFSSSSSGQINSNSVLVALLDSHYTELAELVEKALLLQKLEDTVGMHNITIFAPRNEALERQLDPEFKRFLLEPGNLRSLQTLLMYHIVPKRIRSNDWPSGNSGVVPHQTLSNDHVHLMSKGPGKKVVGLAELVRPDDVDRPDGVIHGIERLLIPRSVQEDFNRRRNLRAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDAMAPGPSLAPAPAPGPGGPRHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGQGEGSAYLFDPDIYTDGRISVQGIDGVLFPAEEEPKTERKTLPVVKVATKPRRGKLLEVACSMLGAFGRVC 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2499 462 SUPERFAMILY FAS1 domain 255 422 IPR036378 -
Glsi02g2499 462 Gene3D FAS1 domain 55 196 IPR036378 -
Glsi02g2499 462 FunFam Fasciclin-like arabinogalactan protein 16 271 422 - -
Glsi02g2499 462 ProSiteProfiles FAS1/BIgH3 domain profile. 51 193 IPR000782 -
Glsi02g2499 462 SUPERFAMILY FAS1 domain 54 196 IPR036378 -
Glsi02g2499 462 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 23 462 IPR044654 -
Glsi02g2499 462 Pfam Fasciclin domain 63 195 IPR000782 -
Glsi02g2499 462 Pfam Fasciclin domain 311 421 IPR000782 -
Glsi02g2499 462 Gene3D FAS1 domain 295 422 IPR036378 -
Glsi02g2499 462 SMART fasc_3 317 422 IPR000782 -
Glsi02g2499 462 SMART fasc_3 90 196 IPR000782 -
Glsi02g2499 462 ProSiteProfiles FAS1/BIgH3 domain profile. 276 404 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2499 Glsi-ChrGlsi02 74895463 74898110 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2499 02 74895463 74898110 Glsi02g2499 02 74895463 74898110 ECH