Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2291 ATGAAGCTCATTAATATTAACCCCAAACTCCTCAGACTCAGTCCGAAACGTCTGTTTCGGTCCAAGAAGGAACGCTCTGTTGTGTCCAGATCCGAACCCGCTTCGTTTAGCTCCGGAACATCGTCTTCCTCGGATGAGTTGACCCACAAGGCCGCAACCGGCGGCGTCGGTTCCAGAACCCCCACCAGCGTGCTGCCAGATATTTCTGGGGACTGGTCTGATATCTCGGCCGATATTCAGTACGATTTGGTTCAAGCATTCAAGCTGATAGACCGGGATAATGATGGAGTCATCTCGAGGGAAGAGCTGGAGGCCTTGCTGACCCGGCTGGGAGCGAAGCCGCCGAGTCAGGAGGAGGTGGCGATGATGGTAAGCGAGGTGGATCACGAAGGTCGAGGGTGTGTAAGCGTGGAGGAGCTTATGCAGCGGGTCGGGTCGGTATGCGGACCCGTATGCGACTCCGATGACTTGAGAGAGGCGTTCGAAGTTTTCGACACGGATCACGACGGGAAAATCTCGGCGGAGGAGCTGTTGCGCGTTTTTAAGGCCATCGGAGACGAGCGGTGCACGTTAGAGGAATGCCGGCGCATGATAGAAAGCGTCGACAGGAACGGGGATGGGATTGTATGCTTCGAGGACTTCTCGCGTATGATGGAGCTGCAGCGATGA 669 0.5575 MKLININPKLLRLSPKRLFRSKKERSVVSRSEPASFSSGTSSSSDELTHKAATGGVGSRTPTSVLPDISGDWSDISADIQYDLVQAFKLIDRDNDGVISREELEALLTRLGAKPPSQEEVAMMVSEVDHEGRGCVSVEELMQRVGSVCGPVCDSDDLREAFEVFDTDHDGKISAEELLRVFKAIGDERCTLEECRRMIESVDRNGDGIVCFEDFSRMMELQR 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2291 222 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 156 219 - -
Glsi02g2291 222 Gene3D - 80 144 - -
Glsi02g2291 222 Pfam EF-hand domain pair 81 142 IPR002048 GO:0005509
Glsi02g2291 222 Pfam EF-hand domain pair 156 218 IPR002048 GO:0005509
Glsi02g2291 222 ProSitePatterns EF-hand calcium-binding domain. 91 103 IPR018247 -
Glsi02g2291 222 SMART efh_1 156 184 IPR002048 GO:0005509
Glsi02g2291 222 SMART efh_1 119 147 IPR002048 GO:0005509
Glsi02g2291 222 SMART efh_1 193 221 IPR002048 GO:0005509
Glsi02g2291 222 SMART efh_1 82 110 IPR002048 GO:0005509
Glsi02g2291 222 MobiDBLite consensus disorder prediction 22 63 - -
Glsi02g2291 222 ProSitePatterns EF-hand calcium-binding domain. 202 214 IPR018247 -
Glsi02g2291 222 ProSiteProfiles EF-hand calcium-binding domain profile. 152 187 IPR002048 GO:0005509
Glsi02g2291 222 Gene3D - 145 222 - -
Glsi02g2291 222 MobiDBLite consensus disorder prediction 30 63 - -
Glsi02g2291 222 FunFam calmodulin-like protein 3 152 222 - -
Glsi02g2291 222 ProSiteProfiles EF-hand calcium-binding domain profile. 189 222 IPR002048 GO:0005509
Glsi02g2291 222 ProSitePatterns EF-hand calcium-binding domain. 165 177 IPR018247 -
Glsi02g2291 222 SUPERFAMILY EF-hand 71 218 IPR011992 -
Glsi02g2291 222 CDD EFh 156 218 IPR002048 GO:0005509
Glsi02g2291 222 FunFam Calmodulin, putative 77 146 - -
Glsi02g2291 222 ProSiteProfiles EF-hand calcium-binding domain profile. 82 113 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2291 Glsi-ChrGlsi02 73302938 73303606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2291 4 218 EF-hand Containing Proteins AT2G41410 53.704 3.26e-65 199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2291 02 73302938 73303606 Glsi02g2291 02 73302938 73303606 ECH