Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2157 ATGTGCCCATCCGGTAGCTCCTCCGCCTCCGCCACCGCCGCGGTGGCATCAGACTCATCTTTCCGGCCAGCTTTCAATGTGCTCGACGCCGACCAAGATGGGAAAATAAGCCGCGACGATCTCCGCACGTTTTACGCTGGGAAGGGCGTCGACGACGACATCATTGGGACGATGATGACCGTGGCGGACACGAACAAGGACGGGTTCGTCGAGTACGAGGAGTTCGAGAGGGTGGTTTTGGAAAACGGCGAGAATGGTAGGTCGTTTGGCTCTGGGTTCATGGAGGATGTGTTCAGAGTCATGGACAAGGACGGGGACGGCAAGCTTAGCCATCAAGATTTGAAGAGCTATATGGCGTGGGCTGGATTTACCACCACCGATGAAGATATAGACGCTATGATCAAACTGGGCGGCGGCGACAAAAACGGCGGCGTCAGCTTCGATGGTTGGCTTCGAATATTAGCCGTTGATTGTGTCGGCGTAGGTCATCCTTGA 495 0.5556 MCPSGSSSASATAAVASDSSFRPAFNVLDADQDGKISRDDLRTFYAGKGVDDDIIGTMMTVADTNKDGFVEYEEFERVVLENGENGRSFGSGFMEDVFRVMDKDGDGKLSHQDLKSYMAWAGFTTTDEDIDAMIKLGGGDKNGGVSFDGWLRILAVDCVGVGHP 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2157 164 SUPERFAMILY EF-hand 19 155 IPR011992 -
Glsi02g2157 164 ProSiteProfiles EF-hand calcium-binding domain profile. 89 124 IPR002048 GO:0005509
Glsi02g2157 164 ProSitePatterns EF-hand calcium-binding domain. 102 114 IPR018247 -
Glsi02g2157 164 ProSiteProfiles EF-hand calcium-binding domain profile. 16 51 IPR002048 GO:0005509
Glsi02g2157 164 ProSiteProfiles EF-hand calcium-binding domain profile. 52 85 IPR002048 GO:0005509
Glsi02g2157 164 FunFam Calmodulin-2 A 16 157 - -
Glsi02g2157 164 CDD EFh 21 75 IPR002048 GO:0005509
Glsi02g2157 164 CDD EFh 95 155 IPR002048 GO:0005509
Glsi02g2157 164 SMART efh_1 20 48 IPR002048 GO:0005509
Glsi02g2157 164 SMART efh_1 129 157 IPR002048 GO:0005509
Glsi02g2157 164 SMART efh_1 54 82 IPR002048 GO:0005509
Glsi02g2157 164 SMART efh_1 93 121 IPR002048 GO:0005509
Glsi02g2157 164 Pfam EF-hand domain pair 21 78 IPR002048 GO:0005509
Glsi02g2157 164 Gene3D - 7 82 - -
Glsi02g2157 164 PANTHER CALCIUM BINDING PROTEIN 19 78 - -
Glsi02g2157 164 ProSitePatterns EF-hand calcium-binding domain. 63 75 IPR018247 -
Glsi02g2157 164 Gene3D - 83 157 - -
Glsi02g2157 164 ProSitePatterns EF-hand calcium-binding domain. 29 41 IPR018247 -
Glsi02g2157 164 Pfam EF hand 94 118 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2157 Glsi-ChrGlsi02 72022913 72023407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2157 1 154 EF-hand Containing Proteins AT5G49480 55.901 2.57e-53 164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2157 02 72022913 72023407 Glsi02g2157 02 72022913 72023407 ECH