Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2119 ATGGAGACGGAAGGAGATACTATTACCTTATCTGACCCAATCGGAACAAATCCATCAGATTATATCCCCCGAGACTCTCCCAAGTGTGAAGTGGCGCGAGTAAGGGAGGCATCAGACATGGCGTCTCTGGCTTCACAATTCACCGGCCTCAGGTGCTCCTCGCCACTCTCTTTTTCGCATCTCTCGAAACCCTTTCCTCCCAGGCAAAACCACAAGCGCGTGCTTCCCATTGTCTCATCAGTAGCAATCTCCAATGCGCAGACTAAAGAGAGGCTCAAGCTCAAAGAACTCTTTGAAGAAGCTTACGAGAGGTGTCGCACTGCTCCGATGGAAGGTGTTTCCTTCACCGTCGAAGACTTCAACGCCACCCTGGATAAGTATGACTTTGATTCTGAAATTGGAACCAAGGTTAAAGGAACAGTGTTCTCCATAGATGCCAATGGAGCGCTTGTTGACATTACTGCAAAGTCGTCAGCATACTTGCCTCTCCAAGAGGCATGCATCCACAGAATTAAACATGTAGAAGATGCAGGCATAGTTACTGGCTTGAGAGAGGAGTTTGTAATCATTGGTGAAAATGAAGCTGATGATAGCTTGATATTGAGTTTAAGGACCATCCAGTATGACCTTGCATGGGAACGCTGTAGACAACTTCAAGCAGAAGATGTTGTTGTCAAGGGTAAGATTGTTGGTGCAAACAAAGGTGGAGTGGTTGCTGTGGTGGAAGGCCTTAGAGGGTTTGTTCCTTTCTCGCAGATATCAACGAAATCTGCTGCAGAAGAGCTTCTTGAGAAGGAGCTTCCTCTAAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTATCCTCAGTAACCGCAAGGCCATGGCTGACAGCCAGGCCCAGCTAGGAATTGGATCTGTTGTCACTGGCTCTGTTCAAAGCCTTAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGCCTTCTTCATGTCAGTCAGATCAGTCATGATCGTGTAACTGATATTGCAACTGTTCTTCAACCTGGTGATACTCTCAAGGTGATGATTTTAAGTCATGATCGGGAGAGAGGTCGAGTAAGCCTTTCCACAAAGAAGTTAGAACCCACACCTGGAGACATGATTCGGAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTTAGACAGAGAATAGCCCAAGCAGAGGCTATGGCTCGTGCAGACATGCTTAGGTTCCAGCCTGAGAGTGGATTAACTCTCAGCAGTGATGGGATCTTGGGACCACTTACTTCAGACTTGCCTGCAGAGGGACTGGATCTGAGTGAGGTGCCCCCAGCTGAAGAATCATGA 1350 0.4741 METEGDTITLSDPIGTNPSDYIPRDSPKCEVARVREASDMASLASQFTGLRCSSPLSFSHLSKPFPPRQNHKRVLPIVSSVAISNAQTKERLKLKELFEEAYERCRTAPMEGVSFTVEDFNATLDKYDFDSEIGTKVKGTVFSIDANGALVDITAKSSAYLPLQEACIHRIKHVEDAGIVTGLREEFVIIGENEADDSLILSLRTIQYDLAWERCRQLQAEDVVVKGKIVGANKGGVVAVVEGLRGFVPFSQISTKSAAEELLEKELPLKFVEVDEEQSRLILSNRKAMADSQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSEVPPAEES 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2119 449 ProSiteProfiles S1 domain profile. 299 367 IPR003029 GO:0003676
Glsi02g2119 449 Pfam S1 RNA binding domain 220 284 IPR003029 GO:0003676
Glsi02g2119 449 Pfam S1 RNA binding domain 298 367 IPR003029 GO:0003676
Glsi02g2119 449 SUPERFAMILY Nucleic acid-binding proteins 129 229 IPR012340 -
Glsi02g2119 449 CDD S1_RPS1_repeat_hs4 299 367 - -
Glsi02g2119 449 Gene3D - 294 371 IPR012340 -
Glsi02g2119 449 FunFam 30S ribosomal protein S1, chloroplastic 216 292 - -
Glsi02g2119 449 FunFam 30S ribosomal protein S1 295 374 - -
Glsi02g2119 449 ProSiteProfiles S1 domain profile. 134 204 IPR003029 GO:0003676
Glsi02g2119 449 ProSiteProfiles S1 domain profile. 222 286 IPR003029 GO:0003676
Glsi02g2119 449 SUPERFAMILY Nucleic acid-binding proteins 298 377 IPR012340 -
Glsi02g2119 449 Gene3D - 215 293 IPR012340 -
Glsi02g2119 449 CDD S1_RPS1_repeat_ec1_hs1 134 204 - -
Glsi02g2119 449 PANTHER 30S RIBOSOMAL PROTEIN S1 46 436 - -
Glsi02g2119 449 SMART S1_6 220 286 IPR022967 -
Glsi02g2119 449 SMART S1_6 297 367 IPR022967 -
Glsi02g2119 449 SMART S1_6 132 204 IPR022967 -
Glsi02g2119 449 MobiDBLite consensus disorder prediction 1 16 - -
Glsi02g2119 449 Gene3D - 117 214 IPR012340 -
Glsi02g2119 449 MobiDBLite consensus disorder prediction 1 25 - -
Glsi02g2119 449 FunFam 30S ribosomal protein S1 118 215 - -
Glsi02g2119 449 Coils Coil 384 404 - -
Glsi02g2119 449 CDD S1_RPS1_repeat_ec2_hs2 222 286 - -
Glsi02g2119 449 SUPERFAMILY Nucleic acid-binding proteins 217 290 IPR012340 -
Glsi02g2119 449 PRINTS Ribosomal protein S1 signature 225 241 IPR035104 -
Glsi02g2119 449 PRINTS Ribosomal protein S1 signature 134 152 IPR035104 -
Glsi02g2119 449 PRINTS Ribosomal protein S1 signature 243 260 IPR035104 -
Glsi02g2119 449 PRINTS Ribosomal protein S1 signature 152 166 IPR035104 -
Glsi02g2119 449 MobiDBLite consensus disorder prediction 421 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2119 Glsi-ChrGlsi02 71527273 71533738 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2119 02 71527273 71533738 Glsi02g2119 02 71527273 71533738 ECH