Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1770 ATGAAGATCAACGTAAACTCCATCGCTCGCAAAGTAGAAGTTGACGATCGAATACCTCTCCGTTATTACTATCGGATTGCCGATAACCTCCTCAAACAGGCAAGTATCTACCGGGCAGAGAACAATATAGTTGACTTGTATATCATACTTCTTAGATTTTCAAGTTTGGTTTCTGAAACTATACCATTTCATCGAGATTACCAAGTTTTACTTCCTAAAGAAAGAGCAGCATATAAGAAGAGATTGCTTGGTGTATTGGATGAGCTTGAATCTTTGAAGCCAGAATTCAAACGCCGGGTTAATGAATTGAATGAGTTGCATGGAAAAACTCAATTTCCTGAAAGTAATGACTCCAATATGGCTTTGAACAGTTCAGTGACTTCATCTTTGGAATGGCCTGCTGTCAATAATAGCTCGCTGCAGCCTGCTAGATCAGGTCCACAGTCTTTGTGGAAATATAATAATAATAATAATGCACATAATTTATCTTCAAATTCGATGCCTACTGACAAGCAGCTTCAGAAACTATCTCTTAGTCTACCACTTCCAAAGAAGGAGACTCTGTCCAGACACTCATTTTTGGGACCAAATGGTCTTCGGGGCCAGTGGCTTGGACCGAGTGCAGGAGTGAAGGTGCAATATCCAAGCAGTAGTGATTTGACTCTTGCTGAGGATTCAAGCTTGAATCAGGATGGACAATATGATCTTGTGGCCGTTAAAGAGGATGATCCAGGAACAGTCAAGTTCACAATGGAGTCAGTGCTCTCCTTGGATGATGGAAGTTGGCCTCTTCCTGCTGACGAGTCCTGTTCTTCTGTAGTGAATGAATCAGGGGAGAGTCCTTTCCAGTTGCTTAAGCAACCTTCTCCTCCCCCAGTTCTTGCTGAGGTGCACCAAGAATATGCCCCAATTCCTCCTTCAAAAGTTGCAGATCCAAGACCAGGACCAGCTAAATCTGGTCAGGATTCTGCACTTGGTCCTGCTACATATCAGCACCTCCATATTCCTGTCAAAATGATGGAAGATTTTTTGAGATTGGCTCTGGAAAATACGCAGAAGAACTTAGAGACATGTGGTATTCTTGCAGGATCCCTGAAAAACAGGGTGTTCCACATCACTACACTTATAATCCCAAAGCAGGAATCAACTTCAGACTCATGTCAAACATTGAATGAGGAAGAGATATTTGAAGTTCAGGACAGTTTATCACTTTTTCCTCTAGGCTGGATTCATACTCACCCATCACAGACTTGTTTCATGTCGTCAGTAGATCTCCATACTCATTACTCATACCAGATCATGTTACCAGAGGCAATTGCAATTGTCATGGCCCCTACAGATACAAAAAGTCCACATGGCATATTTCATCTGTCTGACCCAGGCGGTGTGTCTGTAATTCGCAACTGCCAGCAACGTGGATTTCATCCCCATGAGGAGCCTTCTGATGGAAGTCCTATTTATGAGCACTGCTCTCACGTCTATATGAACTCTAACCTAAAGTTTGATGTTGTTGACCTTCGAGAGAGATGA 1530 0.4255 MKINVNSIARKVEVDDRIPLRYYYRIADNLLKQASIYRAENNIVDLYIILLRFSSLVSETIPFHRDYQVLLPKERAAYKKRLLGVLDELESLKPEFKRRVNELNELHGKTQFPESNDSNMALNSSVTSSLEWPAVNNSSLQPARSGPQSLWKYNNNNNAHNLSSNSMPTDKQLQKLSLSLPLPKKETLSRHSFLGPNGLRGQWLGPSAGVKVQYPSSSDLTLAEDSSLNQDGQYDLVAVKEDDPGTVKFTMESVLSLDDGSWPLPADESCSSVVNESGESPFQLLKQPSPPPVLAEVHQEYAPIPPSKVADPRPGPAKSGQDSALGPATYQHLHIPVKMMEDFLRLALENTQKNLETCGILAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTKSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNSNLKFDVVDLRER 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1770 509 Gene3D Cytidine Deaminase, domain 2 318 509 - -
Glsi02g1770 509 SMART pad1_6 332 460 IPR000555 GO:0005515|GO:0008233|GO:0008237
Glsi02g1770 509 Pfam USP8 dimerisation domain 7 99 IPR015063 -
Glsi02g1770 509 MobiDBLite consensus disorder prediction 304 325 - -
Glsi02g1770 509 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 329 436 IPR000555 GO:0005515|GO:0008233|GO:0008237
Glsi02g1770 509 Gene3D - 3 124 - -
Glsi02g1770 509 FunFam AMSH-like ubiquitin thioesterase 3 1 117 - -
Glsi02g1770 509 SUPERFAMILY JAB1/MPN domain 332 463 - -
Glsi02g1770 509 FunFam AMSH-like ubiquitin thioesterase 3 318 509 - -
Glsi02g1770 509 Coils Coil 86 106 - -
Glsi02g1770 509 PANTHER AMSH-LIKE PROTEASE 3 507 - -
Glsi02g1770 509 MobiDBLite consensus disorder prediction 137 169 - -
Glsi02g1770 509 CDD MPN_AMSH_like 330 507 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Glsi02g1770 509 ProSiteProfiles MPN domain profile. 333 463 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1770 Glsi-ChrGlsi02 63270384 63296956 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1770 02 63270384 63296956 Glsi02g1770 02 63270384 63296956 ECH