Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1017 ATGGATGGAAATCTTGAGGAGCAGAACAAGCTCCCTGAGCTCAAATTAGATGCTAAGCAAGCCCAAGGATTTCTATCTTTTTTCAAAACCCTACCTCATGACCCAAGGGCAATTCGGTTCTTTGATCGCCGGGACTACTATACTGCTCATGGTGAGAATGCAACTTTCATTGCTAAGACCTACTACCGTACTACTACTGCATTAAGACAACTGGGTAGTGGATCTGATGCTGTTTCCAGTGTAAGTGTCAGTAGGAACATGTTTGAAACAATTGCCCGAGATCTACTCCTGGAGAGAACAGACCATACTCTTGAACTCTATGAGGGTAGTGGCTCTAACTGGAGGCTGGTCAAAAGTGGAACACCTGGTAATATAGGCAGTTTTGAAGACGTTCTGTTTGCTAACAGTGAAATGCAAGATTCCCCTGTTGTTGTTGCACTATCACCTAACTTCCGAGAAAATGGGTGCACCATTGGATTAGGGTTTGTTGATCTAACTAAGAGAGTACTTGGGATGGCCGAATTTCTGGATGATAGTCACTTTACAAATGTGGAGTCAGCATTGGTTGCTCTTGGTTGCAAGGAGTGCCTTCTGCCTATTGAGAGTGGAAAGTCTAATGAAAATAAAATGTTGTGCGATGCATTGACTAAATGTGGTGTGATGTTAACAGAAAGAAAGAAATCTGAGTTTAAAGCCAGGGATCTGGTACCAGATCTTGGCAGGCTTGTTAAAGGTTCAATTGAACCAGTTCGCGATTTAGTGGCTGGGTTTGAATTTGCACCTGGTGCTTTGGGGGCATTACTATCTTATGCAGAGTTACTTGGAGATGAAAGCAATTATGGAAATTATACTCTTCAAAGGTACAATCTTGACAGCTACATGAGGTTAGATTCTGCTGCAATGAGGGCACTTAATGTCTTGGAAAGCAAAACAGATGCAAACAAAAATTTCAGTTTGTTTGGTCTCATGAATAGGACATGCACAGCTGGAATGGGGAAACGGTTATTGCACATGTGGCTAAAACAGCCCTTATTAGATGTAAAAGAAATTAATTCCAGGCTGGATGTAGTACAAGCATTTGTAGAGAATACTGTGCTTCGTCAAGATTTGAGGCAACATCTCAAAAGAATATCAGACATTGAGCGATTGGTGCGCAATCTTCAGAAGGGAAGAGCTGGTCTTCAACATATTGTAAAACTTTATCAGTCATGTATAAGACTACCTTACATTAAAAGTGCGCTGGAAAGATATGATGGGCAATTTTCCTCAATGATCAAGGAGAGTTATTTGGAACCTCTTGAGTTATGGACTGATGATGATAACCTAAACAAATTCATTGGTCTTGTAGAAGCTTCTGTTGACCTTGATCAACTAGAGAACGGGGAATACATGATTTCTTCAAGCTATGACTCTACACTAACTAAACTGAAGGAGCAGCAAGAGTCACTGAATAGCCAAATACAAAACTTGCACAGACAAACGGCTAATGATCTTGACCTGCCTATAGATAAGGCATTGAAGTTGGACAAGGGCACCCAATTTGGACATGTTTTCAGAATCACAAAGAAGGAAGAGCCAAAAATAAGGAAGAAGCTCAACTCCCAGTTTATTGTATTGGAGACCAGAAAAGATGGAGTGAAGTTTACCAACACAAAGCTTAAAAAACTAGGGGATCAGTATCAAAAACTATTCGAGGAGTACAAGAACTGCCAAAAAGAGTTGGTCAGTAGAGTAGTTCAAACTGCATCGACTTTCTCTGAGGTGTTTGAGTCTTTGGCTGGATTACTTTCTGAACTGGATGTCTTACAAAGCTTTGCAGACTTGGCTTCTAGTTGTCCTACTCCCTACACGAGGCCTGACATCACTTCATCGGATGAAGGAGATATTATATTAGAAGGCAGCAGACACCCTTGTGTTGAGGCTCAAGACTGGGTGAATTTTATACCAAATGACTGTAAGCTTATCAGAGGAAAAAGCTGGTTTCAAATAATAACAGGGCCTAACATGGGTGGGAAATCGACATTTATCCGACAGGTGGGTGTGAATGTTTTGATGGCACAAGTTGGTTCTTTTGTTCCTTGTGACAAAGCCAGCATATCTGTCCGTGATTGCATTTTTGGTCGAGTTGGTGCTGGTGACTGCCAACTTCGAGGAGTTTCTACATTTATGCAAGAGATGCTTGAAACCGCATCTATATTAAAAGGAGCTACAGACAAGTCCTTGATAATCATTGATGAGTTGGGACGTGGAACATCAACTTATGATGGATTTGGTCTAGCCTGGGCCATTTGCGAGCACATTGTTGAATTGATTAAAGCACCTACTTTGTTTGCAACCCACTTTCATGAACTGACTGCATTAGCCCTGGAAAATGTAAATGATGATCCAGAGAGGCAAATTGTTGGTGTGGAAAATTATCATGTTAGTGCACATATTGATCCATCAACTCGCAAGCTGACTATGCTATACAAGGTTGAACCAGGAGCTTGTGATCAAAGTTTTGGTATTCATGTTGCTGAGTTTGCAAATTTCCCTGAAAGTGTTGTTGCCCTAGCTAGAGGAAAAGCAGCGGAATTGGAAGATTTTTCTCCATCTGCAATTTCCTTAGCTGATCCTACAAAAGAGGTGGGTTCTAAACGCAAGAGAGAGTTTGAACTTGATGATGTGTCTAAAGGGGCTGCAAGGGCTCGCCAATTTCTTGAAGCATTTGCTGATTTGCCATTGGAAATTATGGATAAAATGCAAGCTTTGCAAGAAATAAGGAAGTTGAAGGATGATTTAGAGAAGGATGCCAAAAACTGTTGCTGGCTGCAGCAATTCTTGTTTTTGTCGGGGAGGGCGGAGCTTCTGGCGCAGCCTGTGGCATAG 2868 0.4149 MDGNLEEQNKLPELKLDAKQAQGFLSFFKTLPHDPRAIRFFDRRDYYTAHGENATFIAKTYYRTTTALRQLGSGSDAVSSVSVSRNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNIGSFEDVLFANSEMQDSPVVVALSPNFRENGCTIGLGFVDLTKRVLGMAEFLDDSHFTNVESALVALGCKECLLPIESGKSNENKMLCDALTKCGVMLTERKKSEFKARDLVPDLGRLVKGSIEPVRDLVAGFEFAPGALGALLSYAELLGDESNYGNYTLQRYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEINSRLDVVQAFVENTVLRQDLRQHLKRISDIERLVRNLQKGRAGLQHIVKLYQSCIRLPYIKSALERYDGQFSSMIKESYLEPLELWTDDDNLNKFIGLVEASVDLDQLENGEYMISSSYDSTLTKLKEQQESLNSQIQNLHRQTANDLDLPIDKALKLDKGTQFGHVFRITKKEEPKIRKKLNSQFIVLETRKDGVKFTNTKLKKLGDQYQKLFEEYKNCQKELVSRVVQTASTFSEVFESLAGLLSELDVLQSFADLASSCPTPYTRPDITSSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCDKASISVRDCIFGRVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVELIKAPTLFATHFHELTALALENVNDDPERQIVGVENYHVSAHIDPSTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALARGKAAELEDFSPSAISLADPTKEVGSKRKREFELDDVSKGAARARQFLEAFADLPLEIMDKMQALQEIRKLKDDLEKDAKNCCWLQQFLFLSGRAELLAQPVA 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1017 955 ProSitePatterns DNA mismatch repair proteins mutS family signature. 740 756 IPR000432 GO:0005524|GO:0006298|GO:0030983
Glsi02g1017 955 FunFam DNA mismatch repair protein MSH2 617 937 - -
Glsi02g1017 955 FunFam DNA mismatch repair protein 294 511 - -
Glsi02g1017 955 Gene3D - 522 616 - -
Glsi02g1017 955 Gene3D - 294 521 - -
Glsi02g1017 955 FunFam DNA mismatch repair protein 7 121 - -
Glsi02g1017 955 Coils Coil 553 573 - -
Glsi02g1017 955 SMART DNAend 314 642 IPR007696 GO:0005524|GO:0006298|GO:0030983
Glsi02g1017 955 Pfam MutS domain I 23 128 IPR007695 GO:0005524|GO:0006298|GO:0030983
Glsi02g1017 955 CDD ABC_MSH2_euk 630 860 IPR032642 GO:0005524
Glsi02g1017 955 PIRSF MSH2 6 943 IPR011184 GO:0005524|GO:0006298|GO:0030983
Glsi02g1017 955 SMART mutATP5 659 857 IPR000432 GO:0005524|GO:0006298|GO:0030983
Glsi02g1017 955 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 59 861 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Glsi02g1017 955 FunFam DNA mismatch repair protein MSH2 513 616 - -
Glsi02g1017 955 Pfam MutS family domain IV 469 565 IPR007861 GO:0005524|GO:0006298|GO:0030983
Glsi02g1017 955 Gene3D MutS, connector domain 122 291 IPR036678 GO:0005524|GO:0006298|GO:0030983
Glsi02g1017 955 Gene3D DNA repair protein MutS, domain I 7 121 IPR016151 GO:0005524|GO:0006298|GO:0030983
Glsi02g1017 955 Pfam MutS domain II 143 283 IPR007860 GO:0005524|GO:0006298|GO:0030983
Glsi02g1017 955 FunFam DNA mismatch repair protein 122 291 - -
Glsi02g1017 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 861 IPR027417 -
Glsi02g1017 955 Coils Coil 473 493 - -
Glsi02g1017 955 Gene3D - 617 938 IPR027417 -
Glsi02g1017 955 Pfam MutS domain III 300 606 IPR007696 GO:0005524|GO:0006298|GO:0030983
Glsi02g1017 955 SUPERFAMILY DNA repair protein MutS, domain III 297 611 IPR036187 -
Glsi02g1017 955 Coils Coil 910 933 - -
Glsi02g1017 955 Pfam MutS domain V 662 860 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1017 Glsi-ChrGlsi02 6793508 6801374 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1017 02 6793508 6801374 Glsi02g1017 02 6793508 6801374 ECH