Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0997 ATGGTAATTAGCGAAAGACAGAGACAGAGACAGCGACAGAGAAAGAGACAAAGAGGCAAAGCGAGCGCTGGATGCAGAGGACGTAAGGGGCTGGTTAAGGAACCTGAGAGAGTTTTATGGCAACAGCAGCATCATCGTGTTCTATTCTGCAGGGAGCAGCTGAGACGACAAGCAACCCAGAAGCTGCACCAACTCTTACTAGTGCTTGGCAATCCTCTTGGGTCTATTGGCCCATTCTTTGTTGTGATCTCTGTGCTTACAGTGCTTGCTGTTATTTCATGCTATTTGAGTAGGATGTGGAAGAACCGAAGGGCACCAACCCCATTGGAGAGTATCGAGGTTAGGGGCTGTGTGGGGTGGGTGAAGGTCATGGTTTATTGTGGCAAAGGGAAAAATGGTTGTAAGGTTAAAGATGTTTTTGTGTATTGTTTGTTTAATATGTCAGAGCTTCAAGTTTATCGATTGAAGCAATTACGGGACATTTTTGCTCGATTCGACATGGACTCTGATGGCAGCCTAACCATTCTAGAGCTCGCAGCGCTTCTTCGTTCGCTGGGGCTCAAGCCTTCCGGCGACCAAATCCACGTTCTACTAGCCAATATGGACTCAAACGGCAATGGGTCCGTGGAGTTCGACGAATTGGTCAATGCCATTTTGCCCGACATGAACGAAGAGATTTTCTTGAATCAATCGCAGCTCCTAGAGGTTTTCAAGTGCTTCGATCGCGACGGAAATGGGTACATAACGGCCGCGGAGTTAGCCGGAGCAATGGCCAAAATGGGTCAGCCCCTGACCTATAGAGAGCTCACGGAGATGATCAAAGAGGCCGACACCGATGGCGATGGTGTAATTAGCTTCAACGAGTTTGCCACTGTAATGGCTAGGTCGGCCTCTGATTCCTTAGGCCTTGCATTGCTAACCAGAGTGGGTTGCTGGAAATTTATGTATACGATTGAGAGAAGCAGTTTTGCAATGGAAGGAAATGAATCAAATCAGGGTATTTGCTTTGTTCTTCTACAATTTGGAAAGTCCAGAGCTTCTGATAATTATGAAATCGTGAAGAACTCAGATGAAGGAATATGTTGGAGAGCTTGCCATTTAGGGAATCTTAATATGAACAATTCTATTGATGACTTTTACTGGCAAAGTACATCAAAAACAGTGGCAATGCCACTATTCTATACTCGTACACATGAAAGAATGAAAGATTCTAAACAAAGGAACTATTCTTCTATGATACAACAAAATTACATCATCGCACATTATTGA 1269 0.4468 MVISERQRQRQRQRKRQRGKASAGCRGRKGLVKEPERVLWQQQHHRVLFCREQLRRQATQKLHQLLLVLGNPLGSIGPFFVVISVLTVLAVISCYLSRMWKNRRAPTPLESIEVRGCVGWVKVMVYCGKGKNGCKVKDVFVYCLFNMSELQVYRLKQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDSNGNGSVEFDELVNAILPDMNEEIFLNQSQLLEVFKCFDRDGNGYITAAELAGAMAKMGQPLTYRELTEMIKEADTDGDGVISFNEFATVMARSASDSLGLALLTRVGCWKFMYTIERSSFAMEGNESNQGICFVLLQFGKSRASDNYEIVKNSDEGICWRACHLGNLNMNNSIDDFYWQSTSKTVAMPLFYTRTHERMKDSKQRNYSSMIQQNYIIAHY 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0997 422 Coils Coil 419 422 - -
Glsi02g0997 422 ProSiteProfiles EF-hand calcium-binding domain profile. 189 224 IPR002048 GO:0005509
Glsi02g0997 422 PANTHER CALCIUM BINDING PROTEIN 230 293 - -
Glsi02g0997 422 MobiDBLite consensus disorder prediction 9 23 - -
Glsi02g0997 422 ProSitePatterns EF-hand calcium-binding domain. 277 289 IPR018247 -
Glsi02g0997 422 ProSiteProfiles EF-hand calcium-binding domain profile. 228 263 IPR002048 GO:0005509
Glsi02g0997 422 Pfam EF-hand domain pair 156 217 IPR002048 GO:0005509
Glsi02g0997 422 Pfam EF-hand domain pair 231 293 IPR002048 GO:0005509
Glsi02g0997 422 Gene3D - 146 224 - -
Glsi02g0997 422 SUPERFAMILY EF-hand 144 295 IPR011992 -
Glsi02g0997 422 ProSiteProfiles EF-hand calcium-binding domain profile. 153 188 IPR002048 GO:0005509
Glsi02g0997 422 ProSitePatterns EF-hand calcium-binding domain. 202 214 IPR018247 -
Glsi02g0997 422 Gene3D - 225 306 - -
Glsi02g0997 422 CDD EFh 157 218 IPR002048 GO:0005509
Glsi02g0997 422 MobiDBLite consensus disorder prediction 1 26 - -
Glsi02g0997 422 SMART efh_1 157 185 IPR002048 GO:0005509
Glsi02g0997 422 SMART efh_1 268 296 IPR002048 GO:0005509
Glsi02g0997 422 SMART efh_1 232 260 IPR002048 GO:0005509
Glsi02g0997 422 SMART efh_1 193 221 IPR002048 GO:0005509
Glsi02g0997 422 ProSitePatterns EF-hand calcium-binding domain. 166 178 IPR018247 -
Glsi02g0997 422 FunFam Probable calcium-binding protein CML16 147 299 - -
Glsi02g0997 422 CDD EFh 232 294 IPR002048 GO:0005509
Glsi02g0997 422 ProSitePatterns EF-hand calcium-binding domain. 241 253 IPR018247 -
Glsi02g0997 422 ProSiteProfiles EF-hand calcium-binding domain profile. 264 299 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0997 Glsi-ChrGlsi02 6611788 6620903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0997 154 305 EF-hand Containing Proteins AT1G18530 79.605 1.56e-86 259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0997 02 6611788 6620903 Glsi02g0997 02 6611788 6620903 ECH