Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0728 ATGTCATCTCCAAGCAAGAGAAGAGATATGGATGTAATGAAATTGATGATGAGTGATTATAACGTGGAGACTGTTAATGATGGGCTCAATGAATTCAATGTGGAGTTTCATGGTCCAAAAGAAAGCCTTTATGAAGGTGGAGTTTGGAAAATTCGGGTGGAGCTTCCTGATGCTTATCCATACAAATCCCCTTCTATTGGTTTTGTGAACAAGATATTCCACCCAAATGTTGATGAGCTATCTGGCTCTGTATGCTTGGATGTTATTAACCAATCATGGAGTCCAATGTTTGATCTTCTAAATGTCTTCGAAGTTTTTCTTCCACAACTCTTGCTTTATCCAAATCCTTCAGATCCTCTCAATGGTGACGCAGCATCATTAATGATGAAGGATCGAAAGCTGTATGATCAAAAAGTTAAAGAGTACTGTGATCGGTATGCAAAGAAGGAAAACATCAACTCCACAGCTGATGAAGAGAGTGGAGATGAGGAGGATATCAGTGAAGAGGAAAGGGGATCAAGTGATGATGACATTACCGGCCATGCTGATCCTTGA 555 0.4 MSSPSKRRDMDVMKLMMSDYNVETVNDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNPSDPLNGDAASLMMKDRKLYDQKVKEYCDRYAKKENINSTADEESGDEEDISEEERGSSDDDITGHADP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0728 184 CDD UBCc 10 143 IPR000608 -
Glsi02g0728 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Glsi02g0728 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Glsi02g0728 184 Pfam Ubiquitin-conjugating enzyme 12 142 IPR000608 -
Glsi02g0728 184 SMART ubc_7 4 148 - -
Glsi02g0728 184 SUPERFAMILY UBC-like 4 150 IPR016135 -
Glsi02g0728 184 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Glsi02g0728 184 MobiDBLite consensus disorder prediction 150 184 - -
Glsi02g0728 184 MobiDBLite consensus disorder prediction 157 172 - -
Glsi02g0728 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Glsi02g0728 184 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0728 Glsi-ChrGlsi02 4739662 4741950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0728 4 115 Miscellaneous Gene Families AT3G17000 24.167 4.36e-07 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0728 02 4739662 4741950 Glsi02g0728 02 4739662 4741950 ECH