Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0470 ATGTCTGGGGCTGGCCAGGCCATAGACGTGGAGCATGTGGCCTTTTCCAATATAGATGCTAAAGCGAAATCCAATGCCACAGGAGAATCCACTGTGGCCCGGGCTAGCGATCATAGCAGCGGTGACGGTGGCCGTCGTAACCCCGTTAGGAAAACGGGACCGGTTTCAATTGATCATGTCCTCCTTGCTTTACGTGAAACCAAAGAAGAGAGAGATCTTCGTATTCGTAGCCTCTTCAATTTTTTCGATGCTGCCAATAATGGGTACTTGGATTATGCTCAGATTGAGGCTGGCTTGTCTGCCCTGCAGATACCGCCCGAGTACAAGTACGCCAAGGACCTCTTTAAGGTCTGCGATGCCAACAGAGATGGCAGAATAGATTACTTTGAGTTTCGGCGATACATGGACGATAAGGAATTAGAACTTTACCGCATCTTTCAAGCCATTGATGTTGAACACAGTGGCTGCATTCTCCCTGAAGAGCTTTGGGACGCACTTGTTAAGGCTGGGATTGAAATTGATGATGAAGAACTTGCTCATTTTATGGAGCATGTTGATAAAGATAATAATGGAATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTACTCTATCCTCATGAAGCAACGATTGAAAATATATATCAGCATTGGGAGAGAGTGTGCCTTGGAGACGTTGGAGAACAAGCTGTCATTCCTGAAGGTATCAGCAAGCATGTGCACCGAAGTAAATATTTTATTGCGGGGGGGATAGCAGGAGCTGCTTCTCGTACTGTAACCGCTCCTCTTGATCGTCTGAAGGTTGTATTACAAGTTCAGACGACACATGCTTCTATTATGCCAGCAGTAATTAAGATATGGAAGCAAGATGGTTTATTAGGGTTTTTCCGAGGTAATGGATTAAATGTTGTCAAGGTAGCACCAGAAAGCGCGGTCAAATTTTATATGTATGAAATGTTGAAAAATGTAATCAGAGATAATCAAGGGAACAAGTCAGATATTGGTGCTGCTGGAAGGCTGTTTGCTGGTGGTATGGCTGGTGCAATTTCTCAGACTGTTATCTATCCAATGGATCTTATTAAAACTAGGTTACAGACTTGCACATCTGAAGGTGGAAGGGCTCCTAAGCTGGGATCACTGACAAAGGATATATGGGTTCAAGAGGGACCTCGGGCTTTCTACAGAGGGCTTGTTCCATCTCTTCTTGGTATAATTCCTTATGCAGGCATTGATCTCACAGCTTATGAGACCTTGAAAGATATGTCTAAGAGATATATTCTTCATGATAGTGAACCTGGTGTTTTAGTACAACTTGGGTGTGGAACAATTTCAGGAGCTCTTGGAGCTACTTGCGTATACCCCCTGCAGGTTATCCGTACAAGACTGCAGGCACAACGTTCCAACACTTCTACTGCTTACAAGGGAATGTCTGATGCATTTCGGAGAACTCTTGAGAAGGAGGGCTTTAGAGGCTTCTACAAAGGCCTTCTTCCAAATCTCCTCAAAGTTGTGCCTGCTGCTAGCATTACTTATATGGTCTATGAAAGTATGAAGAAGAGTCTAGATCTCGATTAG 1575 0.4387 MSGAGQAIDVEHVAFSNIDAKAKSNATGESTVARASDHSSGDGGRRNPVRKTGPVSIDHVLLALRETKEERDLRIRSLFNFFDAANNGYLDYAQIEAGLSALQIPPEYKYAKDLFKVCDANRDGRIDYFEFRRYMDDKELELYRIFQAIDVEHSGCILPEELWDALVKAGIEIDDEELAHFMEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYQHWERVCLGDVGEQAVIPEGISKHVHRSKYFIAGGIAGAASRTVTAPLDRLKVVLQVQTTHASIMPAVIKIWKQDGLLGFFRGNGLNVVKVAPESAVKFYMYEMLKNVIRDNQGNKSDIGAAGRLFAGGMAGAISQTVIYPMDLIKTRLQTCTSEGGRAPKLGSLTKDIWVQEGPRAFYRGLVPSLLGIIPYAGIDLTAYETLKDMSKRYILHDSEPGVLVQLGCGTISGALGATCVYPLQVIRTRLQAQRSNTSTAYKGMSDAFRRTLEKEGFRGFYKGLLPNLLKVVPAASITYMVYESMKKSLDLD 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0470 524 SUPERFAMILY EF-hand 60 238 IPR011992 -
Glsi02g0470 524 CDD EFh_PI-PLC 74 203 - -
Glsi02g0470 524 ProSiteProfiles EF-hand calcium-binding domain profile. 173 208 IPR002048 GO:0005509
Glsi02g0470 524 ProSiteProfiles Solute carrier (Solcar) repeat profile. 240 323 IPR018108 -
Glsi02g0470 524 MobiDBLite consensus disorder prediction 26 52 - -
Glsi02g0470 524 ProSiteProfiles EF-hand calcium-binding domain profile. 106 141 IPR002048 GO:0005509
Glsi02g0470 524 Pfam EF-hand domain pair 141 200 IPR002048 GO:0005509
Glsi02g0470 524 SMART efh_1 141 169 IPR002048 GO:0005509
Glsi02g0470 524 SMART efh_1 177 205 IPR002048 GO:0005509
Glsi02g0470 524 SMART efh_1 74 102 IPR002048 GO:0005509
Glsi02g0470 524 SMART efh_1 110 138 IPR002048 GO:0005509
Glsi02g0470 524 PRINTS Mitochondrial carrier protein signature 349 367 IPR002067 GO:0055085
Glsi02g0470 524 PRINTS Mitochondrial carrier protein signature 298 318 IPR002067 GO:0055085
Glsi02g0470 524 PRINTS Mitochondrial carrier protein signature 245 258 IPR002067 GO:0055085
Glsi02g0470 524 PRINTS Mitochondrial carrier protein signature 441 463 IPR002067 GO:0055085
Glsi02g0470 524 PRINTS Mitochondrial carrier protein signature 394 412 IPR002067 GO:0055085
Glsi02g0470 524 PRINTS Mitochondrial carrier protein signature 258 272 IPR002067 GO:0055085
Glsi02g0470 524 FunFam Calcium-binding mitochondrial carrier protein SCaMC-1 153 228 - -
Glsi02g0470 524 Pfam Mitochondrial carrier protein 243 327 IPR018108 -
Glsi02g0470 524 Pfam Mitochondrial carrier protein 433 521 IPR018108 -
Glsi02g0470 524 Pfam Mitochondrial carrier protein 333 422 IPR018108 -
Glsi02g0470 524 SUPERFAMILY Mitochondrial carrier 238 515 IPR023395 -
Glsi02g0470 524 FunFam Calcium-binding mitochondrial carrier protein SCaMC-2 isoform A 46 141 - -
Glsi02g0470 524 Pfam EF hand 112 133 IPR002048 GO:0005509
Glsi02g0470 524 Gene3D - 61 221 - -
Glsi02g0470 524 ProSiteProfiles Solute carrier (Solcar) repeat profile. 432 520 IPR018108 -
Glsi02g0470 524 Gene3D Mitochondrial carrier domain 236 522 IPR023395 -
Glsi02g0470 524 ProSitePatterns EF-hand calcium-binding domain. 119 131 IPR018247 -
Glsi02g0470 524 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Glsi02g0470 524 ProSiteProfiles Solute carrier (Solcar) repeat profile. 334 421 IPR018108 -
Glsi02g0470 524 ProSitePatterns EF-hand calcium-binding domain. 186 198 IPR018247 -
Glsi02g0470 524 PANTHER SOLUTE CARRIER FAMILY 25 198 521 - -
Glsi02g0470 524 ProSiteProfiles EF-hand calcium-binding domain profile. 142 172 IPR002048 GO:0005509
Glsi02g0470 524 FunFam Mitochondrial substrate carrier family protein 236 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0470 Glsi-ChrGlsi02 3008216 3011103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0470 47 524 EF-hand Containing Proteins AT5G51050 78.333 0.0 782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0470 02 3008216 3011103 Glsi02g0470 02 3008216 3011103 ECH