Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0343 ATGAAGGGTGGAACTATTCAGATTAACTGGCATGAAACCAAACCGGTTCTAACCCTTGATTTCCACCCACTCTCTGCTACCCTCGCTACCGGCGGCGCCGATTTTGACATCAAGTTTTGGTCAATAAAATCAACAGAAACACAAAAGAAACTACCTGTAGTTTCCTATCTGAATAGCCTGTCTTACCATAGTTCTGCAGTAAACGTAATTCGCTTCTCTTCTTCAGGGGAACTGCTGGCCTCTGGTGCTGATGGAGGTGACCTTATAATATGGAAATTACATCCAACAGACACAGGTCAGACATGGAAGGTTCTCAAGATGTTAAGATCTCATCACAAGGACATTCTGGATCTTCATTGGTCTCCTGATGCCACCATTATCATTTCCGGATCGGTTGATAATTGTTGCATTATATGGGATGTTAACAAAGGCACCAACCTTCAGACATTGGATGCCCATGCCCATTATGTTCAAGGGGTTGCATGGGACCCTCTAGGGAAGTATGTGGCTTCTCTTAGTTCTGACAGGACTTGCCGAATTTATGTCAATAAGCCTAAAAAATCAAAGGGAAGTGAGAAAATCAATTATGTTTGTCAGCAAGTTATTTCCAAGGCAGAACATCCATTAATAAATAATTCGCAGTCAACAAATTATCATCTCTTCCACGATGAGACACTGCCATCTTTCTTCAGAAGATTAGCCTGGTCTCCTGATGGCTTGTTTCTACTAGTGCCTGCAGGCTCATACAAAATTACTTCTGGATCTGAATCTGTAAATGCGGCTTATGTATTTTCTAGAAATGATCTTTCTCGGCCTGCCATACAGCTTCCGTGCACAAGCAAAGCTGTGGTTGCTGTCCGGTTCTGCCCCATATTTTTTAGCCTTCGGGGAACGAATTCAGCTGGGTTATTTAAGCTCCCTTATCGCATCATTTTTGCTGTGGCCACTTTGAATTCATTGTACGTTTATGACACTGAGAACACTCCTCCAATAGCTATATTTGCTGGTCTTCACTATGCTGCAATAACAGACATCGCATGGTCACCTGATGCCCGTTATTTGGCATTGTCCTCTCAAGATGGTTTCTGCACTTTGGTGGAATTTGAAAATAACGAACTAGGATTGCCTATATCTTCATCAGCGGAAAAGAAAGTTTCCGACAAGGATAGTAAGAGATTACTACTGACATCTGACGGTATGGTCATTGAAGCAACTGGGAATGTTGGTGAAGTGGGAGCAGGAAGCGGGAAAACTGAAGAAGAGAAGGCTAGCGACATGGTCATCGAAATAACTGGGAATTTTGCTGCAGTGGGAGCAGGAAGCAAGAAAAATGAAGACAAGGCTGACGACATGGTCATTGAGGCAACTAGCAATGTTGGTGGAGTTGTTGCAGAAAGCTGGAAACCTGAAACAGAAGAGAAGGCTGACAACATGGTCATTGAAGCAATTGGGAATGTTGATGAGGTCGTAACAGACAGTAGTAAAGATGAAACAGAAGATAAAGCAGAGAGACGGCCACTGATTTCAGATAGTGTGAAATCTGAAGCGAAAGAGAAGGTAGAGAAACAACCATCTAGTTTGGATGGTATAAAAACAGTAGAAGAGAAGACAGAGAAACACGGAGATGATATAAAATCGGAAGCAGAATATAAGGCAGATAAACAGACATCTAGTTTCGATAGTTTAAAAATCGAAGGAGAAAAGGTAGCATGTAATTCAAAGGGTACGCCCGGGTCAAATAAGCCAGGCAAGAAGCGTATAACTCCTATTGCAATCGATCCGTGA 1785 0.4246 MKGGTIQINWHETKPVLTLDFHPLSATLATGGADFDIKFWSIKSTETQKKLPVVSYLNSLSYHSSAVNVIRFSSSGELLASGADGGDLIIWKLHPTDTGQTWKVLKMLRSHHKDILDLHWSPDATIIISGSVDNCCIIWDVNKGTNLQTLDAHAHYVQGVAWDPLGKYVASLSSDRTCRIYVNKPKKSKGSEKINYVCQQVISKAEHPLINNSQSTNYHLFHDETLPSFFRRLAWSPDGLFLLVPAGSYKITSGSESVNAAYVFSRNDLSRPAIQLPCTSKAVVAVRFCPIFFSLRGTNSAGLFKLPYRIIFAVATLNSLYVYDTENTPPIAIFAGLHYAAITDIAWSPDARYLALSSQDGFCTLVEFENNELGLPISSSAEKKVSDKDSKRLLLTSDGMVIEATGNVGEVGAGSGKTEEEKASDMVIEITGNFAAVGAGSKKNEDKADDMVIEATSNVGGVVAESWKPETEEKADNMVIEAIGNVDEVVTDSSKDETEDKAERRPLISDSVKSEAKEKVEKQPSSLDGIKTVEEKTEKHGDDIKSEAEYKADKQTSSFDSLKIEGEKVACNSKGTPGSNKPGKKRITPIAIDP 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0343 594 FunFam Chromatin assembly factor 1 subunit FAS2 4 250 - -
Glsi02g0343 594 Gene3D - 4 247 IPR015943 GO:0005515
Glsi02g0343 594 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Glsi02g0343 594 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Glsi02g0343 594 SMART WD40_4 53 92 IPR001680 GO:0005515
Glsi02g0343 594 SMART WD40_4 327 367 IPR001680 GO:0005515
Glsi02g0343 594 SMART WD40_4 101 140 IPR001680 GO:0005515
Glsi02g0343 594 SMART WD40_4 3 41 IPR001680 GO:0005515
Glsi02g0343 594 SMART WD40_4 143 182 IPR001680 GO:0005515
Glsi02g0343 594 Gene3D - 252 441 IPR015943 GO:0005515
Glsi02g0343 594 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Glsi02g0343 594 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Glsi02g0343 594 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Glsi02g0343 594 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 594 IPR045145 GO:0006335
Glsi02g0343 594 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Glsi02g0343 594 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Glsi02g0343 594 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Glsi02g0343 594 MobiDBLite consensus disorder prediction 489 594 - -
Glsi02g0343 594 SUPERFAMILY WD40 repeat-like 13 400 IPR036322 GO:0005515
Glsi02g0343 594 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 93 - -
Glsi02g0343 594 MobiDBLite consensus disorder prediction 490 561 - -
Glsi02g0343 594 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Glsi02g0343 594 Pfam WD domain, G-beta repeat 58 92 IPR001680 GO:0005515
Glsi02g0343 594 Pfam WD domain, G-beta repeat 11 41 IPR001680 GO:0005515
Glsi02g0343 594 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Glsi02g0343 594 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0343 Glsi-ChrGlsi02 2195561 2200351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0343 25 181 Miscellaneous Gene Families AT5G08390 26.752 3.13e-13 70.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0343 02 2195561 2200351 Glsi02g0343 02 2195561 2200351 ECH