Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0332 ATGCTGAGCTCTGATGAAGGAGATATTGATGTATTCTTCGACTCAGCGGATTGTCTATCACCTCAAGAGTCTGCTTTAGTGAAAGAAGATTTAGGTTCCAACAAGTTTGATTATGAAATTTGGGTGAAGGAGCCTCAGAGTGTGAAGGAAAGACGGAAACGTTTTCTAGAGGGATTGGGATTGGCTGATATTTCTGAGAAAATGGTGGCCTTTGATGCCTCATCAAATACCTTGGGAATGGAGAGGATGAGGAGCGACTACAATGGAGCAATCTCAAATGCCTGCATTTCGCCTACTGATCAAGTACCTGAGAAGTTGGTTCCCTCAGGTTGTAAAGCAGCTTCTGAAGCAAAGGTCTTGTTTGATGAATTGAAGGGGTGCCAAAAAGATAAAGTAGATTTAAGTTTTCAGGAACACAGACATACAGAAGCTGAGGCCTTTGAAGGCCATGGGTATTTTGATACGAGTAAAGAGAAAAAGAAAAACTGGTGGAAGCGCTTTGTAAACAAGAGGAAAGTTGGTGGGGATAAAATCGGATCAAAAGAAAATATAGGGACAAATAAAAGTCGTAGGATTAAGGTAAGGCAGAATAAGAAGAGGTGGATGGAGTTCAGTGGGTTATATATTGGACAAGAGATTAGAGCGCACAAAGGCCTCATCTGGACCATGAAATTTAGTCCCGATGGCCAGTATCTAGCAAGCGGAGGTGAAGATGGGATTGTGCGGATATGGCGTGTTAAGTTGCAGGATACATCCAATAATTGCTTCACTGCAGAAGACAGTCTAGTTAGCAAGGTGAAACAAGACATGTTCTGTTCGTGGAAGAAACAGTCAAGCCAAAACTCCATTTTCCTACCACGTAAGGTTTTTCAAATCGAGGAATTACCACTGCAAGAATTCTATGGCCATTCCAGTGATGTGTTGGATTTGGCATGGTCTAATTCAGACATTCTTCTGTCATCTTCCATGGACAAAACTGTCCGCTTGTGGCAAATTGGATGTAATCAATGTTTAAGTGTTTTCCGTCACACCGATTATGTGACATGCATTCAAGTCAATCCAGTTGACGGAAGTTACTTCATCAGTGGCTCAATTGATGGTAAAGTCCGGATATGGGGAGTTCATGAAGAGCGAGTTGTTGACTGGGCAGATATACATGATGTGATAAGTGCTATAAGTTATCAGCCGGATGGGAAAGGGTTTGTAGTTGGCTCCATTTCAGGCACTTGTCGCTTTTATGTTGCTTCAGGCAAACATTTCCAACTTGAGGCACAGATACGCGTTGACAGAAAGAAGAGATCAGGTGGCAACAAGATTACTGGCATTCAGTTTTCCCAGGAAAAACATCAGAGAGTTTTGATCACATCGGAAGATTCCAAACTCCGCTTATTGGAAGGGATTGATGTTGTCCAGAAATTCAGAGGTCTTCCGAAGTCAGGAAGCCAGATGTCTGGCTCATTTACTTCAGGTGGAAAACATATAATTTCAGTTGGAGAGGACAGTCGTGTGTATATTTGGAACTTGAGTGACATGGAAAATGGGTCATCTAAACATACAAAATCCAATAAATCCTGCGAGTACTTTTTCTCTGAAGGTGTTACCGTTGCAATCCCTTGGTCCGGCACGAGTGCAGACCAAATGGCCTCTGGTTTTGCTCACTGTTGTTCAGAAATGCAATACCAAATGTTTAGAGATTTAGAACGTTGCTCTCGTGGTAATTGGTTCTCCATTGATGGTACAAGCCGAGGTTCCATGACATGGCCTGAGGAGAAGCTTCCTTGTTGGGATTCACCTGGTCACCAGCTTTGTCCCAGACATCTTTGGGACCACAGAGCTGTATCGGAAGCATGGGGGCAGTCAATTGTGGCAGCTGGTTGTGATGGAACTATCAAGACATTCCACAACTTTGGATTGCCTGTTAGGCTTTAA 1929 0.4303 MLSSDEGDIDVFFDSADCLSPQESALVKEDLGSNKFDYEIWVKEPQSVKERRKRFLEGLGLADISEKMVAFDASSNTLGMERMRSDYNGAISNACISPTDQVPEKLVPSGCKAASEAKVLFDELKGCQKDKVDLSFQEHRHTEAEAFEGHGYFDTSKEKKKNWWKRFVNKRKVGGDKIGSKENIGTNKSRRIKVRQNKKRWMEFSGLYIGQEIRAHKGLIWTMKFSPDGQYLASGGEDGIVRIWRVKLQDTSNNCFTAEDSLVSKVKQDMFCSWKKQSSQNSIFLPRKVFQIEELPLQEFYGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCLSVFRHTDYVTCIQVNPVDGSYFISGSIDGKVRIWGVHEERVVDWADIHDVISAISYQPDGKGFVVGSISGTCRFYVASGKHFQLEAQIRVDRKKRSGGNKITGIQFSQEKHQRVLITSEDSKLRLLEGIDVVQKFRGLPKSGSQMSGSFTSGGKHIISVGEDSRVYIWNLSDMENGSSKHTKSNKSCEYFFSEGVTVAIPWSGTSADQMASGFAHCCSEMQYQMFRDLERCSRGNWFSIDGTSRGSMTWPEEKLPCWDSPGHQLCPRHLWDHRAVSEAWGQSIVAAGCDGTIKTFHNFGLPVRL 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0332 642 SMART WD40_4 375 414 IPR001680 GO:0005515
Glsi02g0332 642 SMART WD40_4 466 507 IPR001680 GO:0005515
Glsi02g0332 642 SMART WD40_4 334 373 IPR001680 GO:0005515
Glsi02g0332 642 SMART WD40_4 419 465 IPR001680 GO:0005515
Glsi02g0332 642 SMART WD40_4 206 245 IPR001680 GO:0005515
Glsi02g0332 642 SMART WD40_4 293 331 IPR001680 GO:0005515
Glsi02g0332 642 PRINTS G protein beta WD-40 repeat signature 360 374 IPR020472 -
Glsi02g0332 642 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Glsi02g0332 642 PRINTS G protein beta WD-40 repeat signature 232 246 IPR020472 -
Glsi02g0332 642 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 300 332 - -
Glsi02g0332 642 Gene3D - 205 542 IPR015943 GO:0005515
Glsi02g0332 642 SUPERFAMILY WD40 repeat-like 207 632 IPR036322 GO:0005515
Glsi02g0332 642 PANTHER WD REPEAT DOMAIN 44 137 639 IPR040324 -
Glsi02g0332 642 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 382 IPR001680 GO:0005515
Glsi02g0332 642 Pfam WD domain, G-beta repeat 296 330 IPR001680 GO:0005515
Glsi02g0332 642 Pfam WD domain, G-beta repeat 212 244 IPR001680 GO:0005515
Glsi02g0332 642 Pfam WD domain, G-beta repeat 336 372 IPR001680 GO:0005515
Glsi02g0332 642 FunFam WD repeat-containing protein 44 197 539 - -
Glsi02g0332 642 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 254 IPR001680 GO:0005515
Glsi02g0332 642 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 340 IPR001680 GO:0005515
Glsi02g0332 642 CDD WD40 211 507 - -
Glsi02g0332 642 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 340 372 - -
Glsi02g0332 642 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0332 Glsi-ChrGlsi02 2130539 2133523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0332 208 443 Miscellaneous Gene Families AT5G08390 21.311 4.33e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0332 02 2130539 2133523 Glsi02g0332 02 2130539 2133523 ECH