Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0328 ATGGCGGGACAAGATGCCGAACTGAAGGCAGCGACGACGGCGTACCGGAATGCGAAGGCGGAGCAAAACCGGCGGGAGGAGGCTCGATGGGCTAACCTGATTGGCAATATATTGAAGAACAGAGGAGAGTACGTTGAGGCCCTCAGGTGGCTTCGAAGAGATTATGAGATTTCTCTCAAATATTTGCCTGAGAAGCATTTGCTCCCCACTTGTCAATCTCTCGGGGAGATTTATCTTCGGCTGGAGCGTTTCACCGATGCTCTAACGTATCAGAAAAAGCACTTGGAGCTTGCCAGGGATGCTAATGACCTTGTTGAGCAGCAAAGAGCCAGCACCCAGCTCGGTCGTACTTACCATGAATTATTTTCAAGATCAGAACATGACCATCTCTCAATACGAAATGCCAAAAAGTATTTTAAGTCTGCTATGGAGCTGGCACAGATTCTTAAGGAGGACCCGCCAACGAACAAGTCTTCCTTTTTCAAGGAATATGTTGATGCACACAACAATATAGGAATGCTGGAAATGGAACTTGATAACTTGGAAGAGGCTCGGAAATTTTTAACTAGAGGACTAGAGATTTGCAACGAAGAAGAGGTCAGTGAAGATGATGATGGGCGCAGCAGGCTTCATCATAACCTTGGAAATGTGTATATGGAACTGAGGATGTGGGAAAAAGCTAGAAAAAATATGGAGAAGGACATTCAGATTTGTCATAGAATTGGACATTGTCAAGGGGAAGCAAAGGGCTATATTAATCTTGGTGAAGTGTATTACAGGACTCTGAAGTATGAGGAAGCACTTTCTTATTATGAGAAGGCACTTGCTCTGGCAAAATCCATGGAAGACGAGGATGCATTGGTTAGGCAAATTGATCAAAATATCAAAATAGTAAATGAAGCTATCAAAGTAATGGATGCATTAAAGAAAGAAGAGCAGAACTTCAAAAAGCTTAAAAGATATTTGGCCGCTGCAAGAGGCACTCCACATGAGCGGAAATGTCTACTGCAGCAAAATGCATCTCTTGATCGCCTCCTTGAGAAATCAAGCATGATCTTTGCCTGGGAGAAGCATTGTGAATTTGCAAAGGAGAAGAAAGAAATAGCAAGTGAATTGTGTGACAACGAAAGACTGAGTGACTCATATCTGGCTATTGGAGAATCATACCAGAAACTCAGAAATTTCAATGAAGCCATCAAATGTTACAGAAAAAGTTGGGAAATGTACAAAGCAATTGGTAACTTAGAGGGGCAGGCACTTGTGAAAATTGATATCGGTAATGTTCTGGATTCTGTTCACAATTGGAAAGGAGCACTAGAAGCATTTCAAGAGAGCTACAGGATTGCTGTCGAAGCTAATCTTCCTTCTGTACAGCTATCTGCCCTGGAGAATATGCACTATAGCAACATGATAAGATTTGATGATGAGAATGAGACAAGGAGGTTAAAAGGTTTAATTGACAAGCTGAAGAAGTCCATATATAAAGAACCTGAAACAAAAATTATATCAGAGTATTACTGCTCTGAGACAGCCACTGAAGCAGATGATCATCTGTCAGATAGTGGGTCTGATTACTTCTCTCCAAGGACAAACTGTAGATCAAAAACTGTAACTGCTGGAGAGGAGTTGAACGATGACATGCCTCTGGTTTCACTCTTTCATCCCAGAAAAGGTTCATCCCAAAAAGCAGGTTACGAGGAAAGTTCCAGCAACTCTACTAAACAAGCTGAGCAGTCACCTAGAAGTTTGCCAAAGACAACCAGTAATCATCAGAAGGCTGTTGGTTGTAAACGTGTCCGTGTAATACTTTCTGACGATGATGAGGAAAATGATGATGAGATGGAGCACTCAAACAAAAAGACCCTTGATTGCCGGTTAGAGGACTTTACTACTTCTGACGCAACAAAAAGTAAAAGAAGCGTGGCCAGTCCTACTGCTAAAATTCAGGTTGTCTCAGAGTATGGATCCAAATATGCGATTAACGTCGAAGAGAGCAGTAGTTCTTTCAAATGCTCGAATCCTCACAGAGCCTTGGAAACTGCCAGACATTCTAGATTTTTAAGCAATGATATAGTTGCTGAACCTGATATTGCTAGTGGTTCCAAGTGTGATACAAATTTCTCGGGCAAACTACCACAACATGGTGTTGCCTGTTCCATGAGGCATAATTCTGAACAAGATCAACATATTACAGTCAAGATTGAAAATGACCCAATTTGCATAGAAGCAACCTCATTTGTTGTTGGTGCTCAGTTGAATATTGAGTCTTTGAAGGCTGACGTTGCATGCTTATACTATCTACAACTTCCTCGAGAGAAAAGATCTGAGGGTTTGTTGCCCATTATTCAGCACATTAAATGTGCTGGAAGAGATGTGGAATCCCTGGAATCTGTCGAAAATCTTAAGGAACATCTAGGAAATGACATGGTGGAAGTTTCCATTGATGGATGGGTTCAGAAGCGCTTAATAAAAATGTACATGGACTGCTGCGAGGAGTTGTTTGAGGTACCGAATATGAAGGTACTCAAGAAACTTTACAATTTAGAGGTTTCAGATGATGAGATTATTGTGACTGACTGTGACCTGCAAGATTTGTCAGTAACCCCATTGTTAAACGCACTGCTTTTCCACAAAACATTTGCAATGCTTGACCTCTCTCACAATATGTTAGGAAATGGAACAATGGAGAAACTTCAAAAAGTGTTCACAGCATCATGCCAAACTTATGGTGGCTTAACTCTTGACTTGCATTGCAATCGATTCGGCCCAACCGCCTTGTTTCAGATTTGTGAATGCTCTGTCCTATTTGCTCGACTAGAAGTGCTTAACTTTTCTGGAAACCGTCTAACTGATGCATGTGGATCTTATCTATCGACTATCTTGGAAAAATGTACAGCCCTCTGTAGCTTGAATGTAGAGCGCTGTCACATCACATCCAGAACTATCCAAAAGATTGCTGATGCACTGCACTCTCACTCTGTACTTGCACAGCTTTGTATAGGTTATAACAACCCCGTATCCAGAAATGCTATTGTTAATCTTCTGGCCAAGCTTTCTACTTTGAAAAGGTTTTCTGAGCTGAATCTGAGCGGTCTAAAATTAGGCAAACCAGTTGTTGATACCCTTTGCCAGCTTGCAGGCACCTTAACTTTATCAGGACTTATGCTTGGAAGCACGGGCATTGGAACTGAAGGGGCATCGCAATTAGCACAATCTTTGGTCAATGGGACTCAAGAACTTGTGAAACTTGACCTATCATATTGTGGGCTTACGTCTAACAATGTTTTAACCGGAGCTTTTACTTTATTTTCTTCCATTCTTGAGCTGAACCTGGAAGGAAATCCTATTATGCCAGAGGGCAGCAGCACTCTACGTTCTCTGCTTATAAACCAACAGTGCTGTCTAAAAGTTTTAGTCCTTAGAAACTGTCAACTCGGGCTTGCTGGAGTTCTCCACATAATTGAGGCACTGGGAGAGAACAGCTGCCTACAGGAGCTCAATCTAGCAGGTAATGCTGTTCCCAATGAACTTTCTTCTCTACAATACGACTTCTCAGTGAAAGGATGCTCAGAAAACCTGGAGCGGAAACTAGTTACTTGTGAGTTTCGTAAGGTAAGTTTACCCATGGAAGTGGACGATACTAAAGAGGGTCCTGGCACTCTCAACCCTGACAACCTTCAGCTTGAAGTTGCTAATAGTGAAGATATTCCAACTAGAGTAGAAGCTGCTGCTTCTGGAATTGACGACAGCTGTGGCAGTTCATGCCAAAGAAATTTTTCGGCTACCAAGTGCCATTTCATTCAACAGCTTTCAACTGCAATTGGTGTGGCAAAACACTTGCAATTACTTGACCTTAGCGATAATGGTTTCTCTGCACAAGCTGCTGACACATTCTATAGTTCATGGTCTTCAACTTTACGAGCCCATTCGAGTCACAGGCACATTACGGACCGGATTATTCATCTCTCAACGAAGGAAAATAAGTGCTGCAGAGTGAAAGCGTGCTGCAAGAAAGATTGTATATAA 4026 0.42 MAGQDAELKAATTAYRNAKAEQNRREEARWANLIGNILKNRGEYVEALRWLRRDYEISLKYLPEKHLLPTCQSLGEIYLRLERFTDALTYQKKHLELARDANDLVEQQRASTQLGRTYHELFSRSEHDHLSIRNAKKYFKSAMELAQILKEDPPTNKSSFFKEYVDAHNNIGMLEMELDNLEEARKFLTRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWEKARKNMEKDIQICHRIGHCQGEAKGYINLGEVYYRTLKYEEALSYYEKALALAKSMEDEDALVRQIDQNIKIVNEAIKVMDALKKEEQNFKKLKRYLAAARGTPHERKCLLQQNASLDRLLEKSSMIFAWEKHCEFAKEKKEIASELCDNERLSDSYLAIGESYQKLRNFNEAIKCYRKSWEMYKAIGNLEGQALVKIDIGNVLDSVHNWKGALEAFQESYRIAVEANLPSVQLSALENMHYSNMIRFDDENETRRLKGLIDKLKKSIYKEPETKIISEYYCSETATEADDHLSDSGSDYFSPRTNCRSKTVTAGEELNDDMPLVSLFHPRKGSSQKAGYEESSSNSTKQAEQSPRSLPKTTSNHQKAVGCKRVRVILSDDDEENDDEMEHSNKKTLDCRLEDFTTSDATKSKRSVASPTAKIQVVSEYGSKYAINVEESSSSFKCSNPHRALETARHSRFLSNDIVAEPDIASGSKCDTNFSGKLPQHGVACSMRHNSEQDQHITVKIENDPICIEATSFVVGAQLNIESLKADVACLYYLQLPREKRSEGLLPIIQHIKCAGRDVESLESVENLKEHLGNDMVEVSIDGWVQKRLIKMYMDCCEELFEVPNMKVLKKLYNLEVSDDEIIVTDCDLQDLSVTPLLNALLFHKTFAMLDLSHNMLGNGTMEKLQKVFTASCQTYGGLTLDLHCNRFGPTALFQICECSVLFARLEVLNFSGNRLTDACGSYLSTILEKCTALCSLNVERCHITSRTIQKIADALHSHSVLAQLCIGYNNPVSRNAIVNLLAKLSTLKRFSELNLSGLKLGKPVVDTLCQLAGTLTLSGLMLGSTGIGTEGASQLAQSLVNGTQELVKLDLSYCGLTSNNVLTGAFTLFSSILELNLEGNPIMPEGSSTLRSLLINQQCCLKVLVLRNCQLGLAGVLHIIEALGENSCLQELNLAGNAVPNELSSLQYDFSVKGCSENLERKLVTCEFRKVSLPMEVDDTKEGPGTLNPDNLQLEVANSEDIPTRVEAAASGIDDSCGSSCQRNFSATKCHFIQQLSTAIGVAKHLQLLDLSDNGFSAQAADTFYSSWSSTLRAHSSHRHITDRIIHLSTKENKCCRVKACCKKDCI 1341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0328 1341 SUPERFAMILY TPR-like 21 194 IPR011990 GO:0005515
Glsi02g0328 1341 SUPERFAMILY TPR-like 367 464 IPR011990 GO:0005515
Glsi02g0328 1341 MobiDBLite consensus disorder prediction 562 592 - -
Glsi02g0328 1341 SUPERFAMILY RNI-like 843 1301 - -
Glsi02g0328 1341 Pfam Tetratricopeptide repeat 166 195 IPR019734 GO:0005515
Glsi02g0328 1341 MobiDBLite consensus disorder prediction 551 592 - -
Glsi02g0328 1341 SUPERFAMILY TPR-like 157 285 IPR011990 GO:0005515
Glsi02g0328 1341 Gene3D Ribonuclease Inhibitor 830 1201 IPR032675 -
Glsi02g0328 1341 FunFam Protein TONSOKU 829 1201 - -
Glsi02g0328 1341 Gene3D Tetratricopeptide repeat domain 3 326 IPR011990 GO:0005515
Glsi02g0328 1341 Pfam Tetratricopeptide repeat 28 99 - -
Glsi02g0328 1341 Pfam Tetratricopeptide repeat 381 449 - -
Glsi02g0328 1341 Pfam Tetratricopeptide repeat 208 280 - -
Glsi02g0328 1341 Coils Coil 308 328 - -
Glsi02g0328 1341 Gene3D Tetratricopeptide repeat domain 330 472 IPR011990 GO:0005515
Glsi02g0328 1341 ProSiteProfiles TPR repeat region circular profile. 248 277 - -
Glsi02g0328 1341 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515
Glsi02g0328 1341 SMART LRR_RI_2 1048 1075 - -
Glsi02g0328 1341 SMART LRR_RI_2 877 904 - -
Glsi02g0328 1341 SMART LRR_RI_2 936 963 - -
Glsi02g0328 1341 SMART LRR_RI_2 1103 1130 - -
Glsi02g0328 1341 SMART LRR_RI_2 1277 1304 - -
Glsi02g0328 1341 SMART LRR_RI_2 964 991 - -
Glsi02g0328 1341 SMART LRR_RI_2 1132 1159 - -
Glsi02g0328 1341 FunFam Protein TONSOKU 3 157 - -
Glsi02g0328 1341 SMART tpr_5 208 241 IPR019734 GO:0005515
Glsi02g0328 1341 SMART tpr_5 165 198 IPR019734 GO:0005515
Glsi02g0328 1341 SMART tpr_5 379 412 IPR019734 GO:0005515
Glsi02g0328 1341 SMART tpr_5 248 281 IPR019734 GO:0005515
Glsi02g0328 1341 SMART tpr_5 28 61 IPR019734 GO:0005515
Glsi02g0328 1341 SMART tpr_5 419 452 IPR019734 GO:0005515
Glsi02g0328 1341 SMART tpr_5 68 101 IPR019734 GO:0005515
Glsi02g0328 1341 Coils Coil 164 198 - -
Glsi02g0328 1341 ProSiteProfiles TPR repeat profile. 379 412 IPR019734 GO:0005515
Glsi02g0328 1341 PANTHER PROTEIN TONSOKU 1 1339 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0328 Glsi-ChrGlsi02 2097235 2106421 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0328 02 2097235 2106421 Glsi02g0328 02 2097235 2106421 ECH