Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0239 ATGGCCACTCAGTGCCTGTTGGTCTTGGTCATGGCGCCTCTACTCCTTGGTAATGCAATGCCGATCACTTTTTCTGCGAGGCTGATTCATCGGTTCTCCGAAGAAATGACGGCGCTTCAAGTTTCAACTAGTGGGCGTCATAATATGTCTGTTGCCTGGCCGGAGAGGAAGACTATGGAATACTACAAGATGCTTGTCAGCAACGACTTTCTCAGGCAGAAGATGAAGCTCCGAGCTTCCTATCAGCTGCTTTTCCCCTCTCACGGCAGCAAAACGATGTCGCTTGGAAACGACTTTGGCTGGTTACATTACACATGGATTGATATAGGGACGCCAAGTACTTCATTTCTTGTGGCATTGGATGCCGGCAGTGATCTACTTTGGGTTCCATGTGATTGCATACAGTGCGCTCCCCTATCTGCAAGTTACTATGCCAATCTGGATAGAGATCTGAATGAGTATAGTCCATCTCGTTCAATATCCAGCAAGAATTTATCTTGCAGCCATCAGTTATGTGAGATGGGTTCAAACTGTAAAAGTTCCAAGCAGCAATGTCCTTACACTATCAAGTACTTCTCAGAGAATACATCGAGTTCCGGATTGTTAGTAGAGGATATATTGCATCTTGCATCAGGTGGTGATGGTGAATCAAACTCTTCTGTTAAAGCTCCAGTCATTATAGGGTGTGGTATGAAGCAAAGTGGTGGCTATTTGGATGGGGTTGCTCCAGATGGTCTATTGGGTCTGGGAACTGGGGAGACTTCAGTTCCAAGTTTGCTTGCTAAATCAGGATTAATCCGCAATTCTTTCTCAATTTGCTTTGATGAAGATGATTCTGGTAGAATTTTCTTTGGGGACCAGGGATCAGCTATCCAACAGTCTACTGCATTCTTGCCATTGGATGGAACATATTCAACATACATAATTGGAGTGGAGACATGTTGTATCAGGAAATCATGTCTTAAGATGACAAGTTTCAAAGCACAGGTTGATAGTGGAACATCATTTACATTTCTCCCGGGTCATGTGTATGAAGCTATTACAGAGGAGTTTGACCAACAAGTGAATGCTTCAAGATCTAGTTTTGAAGGATCCCCTTGGGAGTATTGTTATGCATCCAGTTCGCAAGAGTTGCCCAAGGTTCCCTCCCTAACACTCGTGTTCCAACAGAACAACAGCCTTGTGGTCCATAATCCTGTATTTGTTTTCTATGGTGATAAGGGAATTATTGGATTTTGTTTAGCCATACAGCCAGCCGAAGGAGATATGGGAACAATTGGACAGAACTTCATGACAGGTTACCGGCTGGTATTTGATAGGGAAAATATGAAGCTACTTTGGTCAAGCTCAAATTGTCAGGATCTGAGTCTTGGTAAGAGTTTGCCCCTTTCCCCTCCCAACAAGACACCGGCAAACCCCTTGCCTACAGATGAGCAGCAGAGAACCAACGGGTATGCAGTTGCTCCTGCTGTTGCCGGAAGAGCTCCCCACAAACCGTCAGCTGCTTCATCTCGGATGATGTCAAGCACACAATATTGGAGCTGTTGTTTTTTTCTTCTATTTCAACTTGTTACAACCTTTTAA 1584 0.4432 MATQCLLVLVMAPLLLGNAMPITFSARLIHRFSEEMTALQVSTSGRHNMSVAWPERKTMEYYKMLVSNDFLRQKMKLRASYQLLFPSHGSKTMSLGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWVPCDCIQCAPLSASYYANLDRDLNEYSPSRSISSKNLSCSHQLCEMGSNCKSSKQQCPYTIKYFSENTSSSGLLVEDILHLASGGDGESNSSVKAPVIIGCGMKQSGGYLDGVAPDGLLGLGTGETSVPSLLAKSGLIRNSFSICFDEDDSGRIFFGDQGSAIQQSTAFLPLDGTYSTYIIGVETCCIRKSCLKMTSFKAQVDSGTSFTFLPGHVYEAITEEFDQQVNASRSSFEGSPWEYCYASSSQELPKVPSLTLVFQQNNSLVVHNPVFVFYGDKGIIGFCLAIQPAEGDMGTIGQNFMTGYRLVFDRENMKLLWSSSNCQDLSLGKSLPLSPPNKTPANPLPTDEQQRTNGYAVAPAVAGRAPHKPSAASSRMMSSTQYWSCCFFLLFQLVTTF 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0239 527 FunFam Aspartyl protease family protein 1 89 286 - -
Glsi02g0239 527 PRINTS Pepsin (A1) aspartic protease family signature 109 129 IPR001461 GO:0004190|GO:0006508
Glsi02g0239 527 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Glsi02g0239 527 PRINTS Pepsin (A1) aspartic protease family signature 424 439 IPR001461 GO:0004190|GO:0006508
Glsi02g0239 527 PANTHER ASPARTYL PROTEASES 44 445 IPR001461 GO:0004190|GO:0006508
Glsi02g0239 527 Gene3D Acid Proteases 87 286 IPR021109 -
Glsi02g0239 527 ProSiteProfiles Peptidase family A1 domain profile. 103 448 IPR033121 -
Glsi02g0239 527 FunFam Aspartyl protease family protein 1 289 454 - -
Glsi02g0239 527 Pfam Xylanase inhibitor C-terminal 325 448 IPR032799 -
Glsi02g0239 527 Gene3D Acid Proteases 288 454 IPR021109 -
Glsi02g0239 527 Pfam Xylanase inhibitor N-terminal 104 286 IPR032861 -
Glsi02g0239 527 SUPERFAMILY Acid proteases 97 453 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0239 Glsi-ChrGlsi02 1549259 1554668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0239 96 455 Miscellaneous Gene Families AT1G44130 27.720 2.68e-25 106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0239 02 1549259 1554668 Glsi02g0239 02 1549259 1554668 ECH