Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0218 ATGGCAGACAATTCCCCGGACAGGAAATCTAGCTGTGGATTACTCAATGCAGTATTTGGGCGACGCAATTTGTGGCAACGAAGAACGACCTCCACACCGTCTGCTCCCACCAACAGCAATAGCAATGATTTTAGCAAGGCAACAGACAGCTACAATACAAAGAGGCGGCGAGGTGCTTCTGATGGTGCCGATATACTTGAAACAACATCATCTAATCCCACAGCATCGTCTTATCGTTCTGCCACCAAGCCTCAGACTAATTCCAACAACCCAGCTCCCGTGGTAAATCAAAATCAGCAAAGAAAACATTCCAACGAAACATCAATTGCTTTGCCTTCTTCAGGGACAGGCCCAACAAAAGTGTCAGCTCCCCAAGGTTATGTTAACCAGGGCAGAAGGGTTCCAAAAGAAGCCATTGGCATTTCGGGCGAGCTTGAAAGTATGATTGCCGATCACCAAAAATCCAAGGGAAGCAGTACGCTTGTCCGGGCTTCTTCGAGCAATGTCATGCTTTTTGGTAATTTAGGTAACTTGAGGCAAGGAGGAGGAGGAGGAGGAGGAAATATCAATTCTTACAATGTAATGGATCACCTTCCAAAGCCGAGAGAGGAAACCCCAGTTACAAATGGAAAATACACAAACCGTGTAACAGAAAATGCAGCAATTAAAACTAAAGAGAAACGCAGCGAAGAAGAAGCGGGTTCTCTCTGCAGAGCTCTATCTACTAGAATGGATCCCGAGCAATTGAAGATAATGGGTAATGAGGATTATAAGAACGGAAGGTTTGCGGAGGCCTTGTCTCTATATGATGCAGCCATCTCTATTGACCCCAATAAGGCTTCCTACAGAAGCAACAGAAGTGCAGCATTAACGGCTCTTGGTAGGCTTCTGGAGGCTGTGTTTGAGTGCAGAGAAGCCATTCGAATCGAACCCCATTACCATAGAGCTCATCATCGATTGGGAAATTTGTACCTTAGATTAGGAGAAACAGATAAGGCCCAGTATCATTTTAAACAGGCAGGACCAGAGGCCGACCCCGATGAGATTGCAAAAGTAAAGAATCTTCAGAACCATCTTAGCAAGTGCACAGAGTCTCGGAGGTTACGAGATTGGAACACCCTGAGAAAGGAGGCCAACTACTCTATATCAGCTGGGGCAGATTCTGCTCCCCAGATATTTGCTTTGGAAGCGGAAGCCCTTCTAAAGCTCCGTAGGCATCAAGACGCAGATGAAGTAATATCGAAGGGCCCTAGTTTCGGGGATGATGAGTGTACTGCGTTCTTTGGACCTATCGGTTATGCAAATTTGTTGGTGACGCGGGCTCTGGTTGATATGGCTGCTGGCAGATTTGAAGATGCTTTGGAGGTGTCCCAACGGGCAGCTAGGTTGGACTCAAATAACAGGGAGGCCAACATGGTGACGAGGAGGGCTCGAGCAGTAGCAGCAGCTCGATCAAATGGAAACGAGCTTTTCAGGGCATCCAAATACTCGGAGGCATTAGCTGCCTATGGAGAGGGGCTTGAGCATGACCCATATAACTCGGTTTTGTTGTGCAATCGAGCTGCATGTCGATCCAAATTAGGCCAACATGAGAGAGCCGTGGAGGATTGCACTGCTGCCCTTAATTTACGCCCATCATACAGCAAGGCTAGATTGAGGAGAGCCGATTGCAATGTCAAGTTGGGAAGATGGGAAGCTTCAATTCAAGACTATGAAATGTTGCTGAAAGAAACACCGGAAGATGAGGGAGTAAAGAAGGCCTTGTTGGAGGCCCAAGTACAGCTCAAGAAACATCGAGGCGAAGTGGTTTAG 1812 0.4719 MADNSPDRKSSCGLLNAVFGRRNLWQRRTTSTPSAPTNSNSNDFSKATDSYNTKRRRGASDGADILETTSSNPTASSYRSATKPQTNSNNPAPVVNQNQQRKHSNETSIALPSSGTGPTKVSAPQGYVNQGRRVPKEAIGISGELESMIADHQKSKGSSTLVRASSSNVMLFGNLGNLRQGGGGGGGNINSYNVMDHLPKPREETPVTNGKYTNRVTENAAIKTKEKRSEEEAGSLCRALSTRMDPEQLKIMGNEDYKNGRFAEALSLYDAAISIDPNKASYRSNRSAALTALGRLLEAVFECREAIRIEPHYHRAHHRLGNLYLRLGETDKAQYHFKQAGPEADPDEIAKVKNLQNHLSKCTESRRLRDWNTLRKEANYSISAGADSAPQIFALEAEALLKLRRHQDADEVISKGPSFGDDECTAFFGPIGYANLLVTRALVDMAAGRFEDALEVSQRAARLDSNNREANMVTRRARAVAAARSNGNELFRASKYSEALAAYGEGLEHDPYNSVLLCNRAACRSKLGQHERAVEDCTAALNLRPSYSKARLRRADCNVKLGRWEASIQDYEMLLKETPEDEGVKKALLEAQVQLKKHRGEVV 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0218 603 Pfam Tetratricopeptide repeat 253 308 - -
Glsi02g0218 603 ProSiteProfiles TPR repeat profile. 480 513 IPR019734 GO:0005515
Glsi02g0218 603 MobiDBLite consensus disorder prediction 25 48 - -
Glsi02g0218 603 MobiDBLite consensus disorder prediction 25 134 - -
Glsi02g0218 603 Gene3D Tetratricopeptide repeat domain 244 600 IPR011990 GO:0005515
Glsi02g0218 603 ProSiteProfiles TPR repeat profile. 246 279 IPR019734 GO:0005515
Glsi02g0218 603 MobiDBLite consensus disorder prediction 64 126 - -
Glsi02g0218 603 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 6 602 IPR044534 -
Glsi02g0218 603 ProSiteProfiles TPR repeat profile. 434 467 IPR019734 GO:0005515
Glsi02g0218 603 Pfam Tetratricopeptide repeat 316 345 IPR019734 GO:0005515
Glsi02g0218 603 SUPERFAMILY TPR-like 245 592 IPR011990 GO:0005515
Glsi02g0218 603 SMART tpr_5 548 581 IPR019734 GO:0005515
Glsi02g0218 603 SMART tpr_5 280 313 IPR019734 GO:0005515
Glsi02g0218 603 SMART tpr_5 434 467 IPR019734 GO:0005515
Glsi02g0218 603 SMART tpr_5 514 547 IPR019734 GO:0005515
Glsi02g0218 603 SMART tpr_5 246 279 IPR019734 GO:0005515
Glsi02g0218 603 SMART tpr_5 480 513 IPR019734 GO:0005515
Glsi02g0218 603 SMART tpr_5 314 347 IPR019734 GO:0005515
Glsi02g0218 603 Pfam Tetratricopeptide repeat 503 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0218 Glsi-ChrGlsi02 1403650 1405882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0218 328 580 Glycosyltransferase AT3G04240 23.466 5.88e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0218 02 1403650 1405882 Glsi02g0218 02 1403650 1405882 ECH