Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0179 ATGGGCGGCCGAGGCAGGGCTCGCACTCAAAGAAAGCATTTCCGGCAGAGCAGAGAGAATGTGTGGAAGCGTTCAAAACCTGATCCTTCGTCCGAAAACCCTGACGGCACCAAAGCCACTGACAATCCGACTTGGACTCCCTTCGCCACTCAGAACCCTGCTTTTGATGAGTATTACAGAGAGCAGGGCATAGTGCCCTCAGAAGAGTGGGATGCATTCATCGGACTTCTCAGAACTCCATTGCCTGCTGCCTTTAGAATTAATTCTTGTAGCCAGTTTTCTGCAGACATTCGATCGCAATTGGAGAATGACTTTGTGCAATCTCTTCGGGCTGAGGATACTCAAGGGGATGAGGCGGAGGCTATTAGACCTTTGCCATGGTATCCTGAGAATCTTGCTTGGCATTCAAACTTCTCCCGTATGCAGCTGAGGAAAAACCAAACACTTGAGAGGTTCCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGTGCCTCCCCTCTTCTTGAATGTACATCCAAATCATTTTGTACTTGATATGTGTGCGGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTATACACCAATCAACTAAAGCTGGGGCACTACCTGACGGAATGGTTATAGCAAATGATCTTGATGTCCAAAGATGTAATCTTCTCATCCACCAAACAAAAAGGATGTGCACAGCCAACCTAATTGTCACTAATCATGAAGCTCAGCAATTCCCAGGTTGTCGTTTAATCAGAAATCACGAAACATTGGAACCAGATCAGCATATTGGCAAACTTTTATTTGATTGCATTCTTTGTGATGTCCCGTGCAGTGGAGATGGAACCCTTCGCAAGGCACCTGATCTCTGGAGGAAATGGAACACTGGGATGGGCAATGGACTTCATAGCCTACAAGTTCTAATAGCTATGCGAGGTGTATCTTTACTTAAAGTTGGAGGAAGAATGGTATACTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGCAGAGATTTTGCGAAGGTGTGGAGGGTCTGTTGAACTTGCTGATGTCTCTAGTGAGCTTCCCCAACTTATTCGCCGGCCAGGTCTCAAGAGATGGAAGGTCCGTGACAGGGGCTTGTGGTTGGCCTCCTACAAAGATGTCCCCATGTTTCGCAAAAGTGCAGTTCTTCCCAGCATGTTTCCACCCGGAAAAAGCTATCAGAGTCTTGTTGACAGTAATCATAAGGTGGACATGGTAGCTGATATTGATAATGGTGTTAATGGAAACTCTAAAGGTGGTGTTCAAACAATGGAGAATCCTATGACGCATGAGTTTACTGAGGAAGTTTTTGATTTACCACTAGAGCGGTGCATGAGGATAGTACCTCATGATCAAAACACTGGAGCCTTCTTTGTTGCTGTACTGCAAAAGGTTTCTCCTCTTCCAGCAATTACAGTTCAGGAAAAACCTAAAAAAGGAATTGATAAGCAAAGTGTAGAACCAGAAAACCAGGATATTGAGGATTCAAAAGTAATGCAGGTTAATTTGTTAGAAAGTACACATGAGGAAGTTTTGGAAGAGGTCAATATAATTGATGACAAACCCAATACAGCAGATTTGGAAGTTAATCCTTCCGCTACATGTATAGAAAGGGACTCAGAGGAAGCCCAAGAGCCTCTTAAAACAGAAAGCATAGCAGATGAAGCCCAAGAGCCACTTAATATAGAAAGCATAGCAGATGAAGCCCAAGAGCCTCTTAGTACAGAAAGCATAGCAGATGAAGCCCAAGAGTCTCTTAGTACAGAAAGCATAGCAGAGGAAGCCCAAGAGCCTCTTAATACAGAAAGCATACCGGAGGAAGCCCAAGAACCTCTTAATACAGAAAGCATAGCAAAGATAACTCCAGGAAAAAGAAAGCTGCAGATTCAAGGAAAGTGGAGAGGCGTCGACCCTGTTGTCTTCTTCAAAGATGAAATCATTATTAACAGCATAAAGGCATTCTATGGTATCCATGAAAGGTTTCCATTCAGTGGCCACCTTGTTACTAGAAACAATGATACAAGCCATGTTAAAAGAATTTACTACGTCTCCAAGTCAGTCAAAGATGTTCTTGAACTGAATTTCTCAGTCGGGCAGCAACTCAAAATAACATCCATTGGCCTGAAGATGTTTGAAAGACAGACATCAAGAGAAGGAAGCACTGCACCGTGTGCTTTCCGAATATCATCTGAAGGATTGCCCCTTATTTTGCCATACATCACCAAACAGATTCTACGTGCATCTCTCGTAGACTTCAAGCATCTTCTGCAATATAAGGCTATAAAATTTACAGATTTTGTTGATGCTGAGTTTGGTAAAAAGGCAGCAATCCTAATGCCAGGATATTGTGTGGTAGTTTTGGGTAAAGAGGACAAGGCTGCTTCACAGTCCTTTCAAGTGGATGAGTCAACCATAGCCATAGGATGCTGGAAAGGTAGGGCCGGTTTGTCAGTGATGGTTACTGCAATGGACTGCCGAGAACTGCTTGAAAGACTTTTAATTCGTCTGGACACAGAAAAAGGCTCCTCCATGTACGAGGACAAACCCTCTAATGATGTGGGTGACAAAGTACCGGGCACGAACGGCATAGCTGATGTGGAAGCTACGGGGAGTGAAAGTAGTTAA 2685 0.4358 MGGRGRARTQRKHFRQSRENVWKRSKPDPSSENPDGTKATDNPTWTPFATQNPAFDEYYREQGIVPSEEWDAFIGLLRTPLPAAFRINSCSQFSADIRSQLENDFVQSLRAEDTQGDEAEAIRPLPWYPENLAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLNVHPNHFVLDMCAAPGSKTFQLLEIIHQSTKAGALPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQQFPGCRLIRNHETLEPDQHIGKLLFDCILCDVPCSGDGTLRKAPDLWRKWNTGMGNGLHSLQVLIAMRGVSLLKVGGRMVYSTCSMNPIENEAVVAEILRRCGGSVELADVSSELPQLIRRPGLKRWKVRDRGLWLASYKDVPMFRKSAVLPSMFPPGKSYQSLVDSNHKVDMVADIDNGVNGNSKGGVQTMENPMTHEFTEEVFDLPLERCMRIVPHDQNTGAFFVAVLQKVSPLPAITVQEKPKKGIDKQSVEPENQDIEDSKVMQVNLLESTHEEVLEEVNIIDDKPNTADLEVNPSATCIERDSEEAQEPLKTESIADEAQEPLNIESIADEAQEPLSTESIADEAQESLSTESIAEEAQEPLNTESIPEEAQEPLNTESIAKITPGKRKLQIQGKWRGVDPVVFFKDEIIINSIKAFYGIHERFPFSGHLVTRNNDTSHVKRIYYVSKSVKDVLELNFSVGQQLKITSIGLKMFERQTSREGSTAPCAFRISSEGLPLILPYITKQILRASLVDFKHLLQYKAIKFTDFVDAEFGKKAAILMPGYCVVVLGKEDKAASQSFQVDESTIAIGCWKGRAGLSVMVTAMDCRELLERLLIRLDTEKGSSMYEDKPSNDVGDKVPGTNGIADVEATGSESS 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0179 894 MobiDBLite consensus disorder prediction 14 31 - -
Glsi02g0179 894 Pfam 16S rRNA methyltransferase RsmB/F 178 354 IPR001678 GO:0008168
Glsi02g0179 894 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 10 866 IPR023267 GO:0001510
Glsi02g0179 894 PRINTS RNA (C5-cytosine) methyltransferase signature 328 344 IPR023267 GO:0001510
Glsi02g0179 894 PRINTS RNA (C5-cytosine) methyltransferase signature 278 290 IPR023267 GO:0001510
Glsi02g0179 894 PRINTS RNA (C5-cytosine) methyltransferase signature 188 198 IPR023267 GO:0001510
Glsi02g0179 894 PRINTS RNA (C5-cytosine) methyltransferase signature 467 484 IPR023267 GO:0001510
Glsi02g0179 894 MobiDBLite consensus disorder prediction 590 633 - -
Glsi02g0179 894 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 362 381 IPR023270 GO:0016428
Glsi02g0179 894 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 134 155 IPR023270 GO:0016428
Glsi02g0179 894 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 721 733 IPR023270 GO:0016428
Glsi02g0179 894 Gene3D Vaccinia Virus protein VP39 49 405 IPR029063 -
Glsi02g0179 894 MobiDBLite consensus disorder prediction 542 578 - -
Glsi02g0179 894 MobiDBLite consensus disorder prediction 558 572 - -
Glsi02g0179 894 MobiDBLite consensus disorder prediction 862 894 - -
Glsi02g0179 894 MobiDBLite consensus disorder prediction 1 48 - -
Glsi02g0179 894 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 73 485 IPR001678 GO:0008168
Glsi02g0179 894 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 50 392 - -
Glsi02g0179 894 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 52 485 IPR029063 -
Glsi02g0179 894 MobiDBLite consensus disorder prediction 32 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0179 Glsi-ChrGlsi02 1133357 1140769 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0179 02 1133357 1140769 Glsi02g0179 02 1133357 1140769 CCT
Glsi02g0179 02 1133357 1140769 Glsi02g0179 02 1133357 1140769 ECH