Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0152 ATGGCTATTCAGCCGGAAGCCCAGCCATCCAACGAAACCGCAGCCGCACCAGCAACAATGGAGTCCTTCTCCCTTACCTCTATCTGCCTTCTCCTTGTTTTCACTATTCAGAGCGTGTCATCTCAAAATATATCTGAGATTGTGAGAGGCCTACAGCAAGCTAGCTTCCCACCAAGAGGTTGGAATTCCTATGATTCCTTTTGCTGGACAATTTCTGAAGAAGAATTCTTACAGAGTGCTGAAGTTGTTTCGCAGCGACTCCATGTTCATGGATATGAGTATGTTGTGGTGGATTACCTCTGGTATAGAAGGAAAGTCAAGGGTGCTTATCCCGATTCTCTTGGATTCGATGTGATTGATGAATGGGGTAGGATGATCCCTGACCCAAAAAGATGGCCTTCTTCCATAGGTGGGAAAGGTTTCAAAGAAGTGGCTAATAAAGTACATAGCATGGGTTTGAAGTTTGGGATTCATGTTATGAGAGGGATAAGTACTCAAGCAGTCAATGCAAACACCCCTATCCTAGATACAACGAAGGGAGGCACATATCAGGAATCTGGTAAAGTGTGGCATGCAAAAGACATTGCAATCCCAGAAAGGGCTTGCGCATGGATGTCTCATGGTTTCATGAGTGTAAATACAAAGTTGGGGGCCGGAAGAGCCTTTTTGAGGTCCCTCTATGAGCAGTATGCTGCATGGGGTGTTGATTTCGTGAAACATGACTGTGTGTTTGGCGATGACTTGGATTTGAATGAAATAAGCTATGTATCAGAGATTCTCAGGGAGCTTGATCGCCCCATTGTATATTCTCTGTCTCCTGGAACCAGTGTGACACCAGCCATGGCTAAGGATGTCAGTGGACTCGTTAACATGTATCGCATAACAGGAGATGACTGGGATACATGGGGAGATGTTGCAGCTCATTTTGATGTATCAAGGGATTTTTCTACTGCTAATATGATAGGAGCAAAAGGTTTAATGGGAAATTCCTGGCCTGATTTGGATATGCTACCATTGGGATGGCTAACTGATCCAGGTTCGAATGAAGGTCCACACAGGTATTGTAACCTTAATCTAGAAGAGCAAAAAACTCAGATCACTTTGTGGTCTATGGCAAGATCTCCTCTTATGTATGGAGGGGATGTGCGGAAGCTTGACAAAAACACATATGATCTCATCACAAATCCTATTCTGTTGGAGATAAATTCTTTTAGCTCATATAATATGGAGTTTCCATATATCACAAGCTTGGAGGATATCAAGATTCAAGACCAGAATCTTGCTGGGCAAATGAGAGGATCTAAGAGAGATACACAAACATCATATACCCATTCAATTGGTCTCACTGACTGCACTGAGTCAAAGGCAATAGGTTGGTCTATTGAAAGTTTTAACCATGATGATGTTGAAAGAATCTGTTGGAAAAGTAGTTCAAGAAGCAAGCATCGGAAACCTTTCTGCGTGAACAAGAGAGAACTTCGTTTAGCATTAGAAGAGAGTATGTATCAAGAAGACTATAGAGGGAAACATCATTTAGTTGCAGCAAACAGAATGAAACTTTGCCTGGATGCTTCTCCAAAAAGAAAGCTTACTTCTAAAGAGTTCAGGAGAGGTACATTTTCTCCTTGCAGACGGGATGCCAATCAGATGTGGGAATTAAACCCTAATGGGACCCTGGTAAATAGTTATTCCAGCCAGTGTGCTACAGTGGATTCTGCCAAAGCTGAAACTAATTCTTATGGGATTCGTTCTTGGATTGCAAAAGGAAGAAAAGGAGAAGTCTATGTTGCTTTCTTCAATCTAAATGCACAGAAGACGGTGATGTCTGCGAAGATATCAGACCTCGCGAAGGTACTTCCTGGCGGAGACTTTAATTACTGTAAGGGCAGGGAAGTGTGGAGTGGAAAGGACATAACGATGACGCAGGGGACGTTATCAGCGGCTGTGGAAAAGCATGGATGTGCGCTATTTGTCCTGAATTGCAACTAG 1989 0.4304 MAIQPEAQPSNETAAAPATMESFSLTSICLLLVFTIQSVSSQNISEIVRGLQQASFPPRGWNSYDSFCWTISEEEFLQSAEVVSQRLHVHGYEYVVVDYLWYRRKVKGAYPDSLGFDVIDEWGRMIPDPKRWPSSIGGKGFKEVANKVHSMGLKFGIHVMRGISTQAVNANTPILDTTKGGTYQESGKVWHAKDIAIPERACAWMSHGFMSVNTKLGAGRAFLRSLYEQYAAWGVDFVKHDCVFGDDLDLNEISYVSEILRELDRPIVYSLSPGTSVTPAMAKDVSGLVNMYRITGDDWDTWGDVAAHFDVSRDFSTANMIGAKGLMGNSWPDLDMLPLGWLTDPGSNEGPHRYCNLNLEEQKTQITLWSMARSPLMYGGDVRKLDKNTYDLITNPILLEINSFSSYNMEFPYITSLEDIKIQDQNLAGQMRGSKRDTQTSYTHSIGLTDCTESKAIGWSIESFNHDDVERICWKSSSRSKHRKPFCVNKRELRLALEESMYQEDYRGKHHLVAANRMKLCLDASPKRKLTSKEFRRGTFSPCRRDANQMWELNPNGTLVNSYSSQCATVDSAKAETNSYGIRSWIAKGRKGEVYVAFFNLNAQKTVMSAKISDLAKVLPGGDFNYCKGREVWSGKDITMTQGTLSAAVEKHGCALFVLNCN 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0152 662 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 28 661 IPR002241 GO:0004553|GO:0005975
Glsi02g0152 662 Gene3D Aldolase class I 49 405 IPR013785 -
Glsi02g0152 662 PRINTS Glycosyl hydrolase family 27 signature 145 166 IPR002241 GO:0004553|GO:0005975
Glsi02g0152 662 PRINTS Glycosyl hydrolase family 27 signature 51 70 IPR002241 GO:0004553|GO:0005975
Glsi02g0152 662 PRINTS Glycosyl hydrolase family 27 signature 360 381 IPR002241 GO:0004553|GO:0005975
Glsi02g0152 662 SUPERFAMILY (Trans)glycosidases 53 402 IPR017853 -
Glsi02g0152 662 Pfam Alpha galactosidase C-terminal beta sandwich domain 584 659 IPR041233 -
Glsi02g0152 662 CDD RICIN 509 573 IPR000772 -
Glsi02g0152 662 CDD GH27 57 402 IPR002241 GO:0004553|GO:0005975
Glsi02g0152 662 Pfam Alpha galactosidase A 70 166 IPR002241 GO:0004553|GO:0005975
Glsi02g0152 662 Pfam Alpha galactosidase A 228 402 IPR002241 GO:0004553|GO:0005975
Glsi02g0152 662 Gene3D - 574 661 IPR013780 -
Glsi02g0152 662 SUPERFAMILY Ricin B-like lectins 517 585 IPR035992 -
Glsi02g0152 662 SUPERFAMILY Glycosyl hydrolase domain 578 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0152 Glsi-ChrGlsi02 971146 980808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0152 24 496 Glycoside Hydrolase AT3G26380 67.442 0.0 665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0152 02 971146 980808 Glsi02g0152 02 971146 980808 CCT
Glsi02g0152 02 971146 980808 Glsi02g0152 02 971146 980808 ECH