Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1975 ATGGTAGATGAGTCTCTATACCCAATAGCTGTTTTGATTGATGAATTAAAGAACGAAGATATTCAGCTTAGATTGAACTCGGTCCGCAAACTATCCACAATTGCACGTGCTCTTGGGGAGGAAAGGACCAGGAAGGACTTGATTCCATTTCTCAGTGAGAAAAATGAGGATGATGATGAGGTGCTTCTTGCAGTGGCAGAGGAATTGGGTGTGTTTATTCCTTATGTTGGAGGTGTAGAGCATGCGAATGTGCTGCTACCCCCACTAGAAACTCTCTGTACCCTTGAGGAAATTTGTGTGAGGGACAAAGCAGTGGAGTCACTGTGTAGAATTGGAGCTCAAATGAGAGAACAAGAATTGGTTGAATACTTCATTCCTCTTGTTAAGAGACTGGCTGCCGGTGAGTGGTTTACAGCTCGAGTTTCTTCATGCGGCTTGTTCCATATTGCTTACCCTACTGCACCAGAGACTGTAAAAACTGAACTGAGAACTGTATATGGTCAACTGTGTCAAGATGAAATGCCTATGGTTAGAAGATCTGCTGCAACAAACCTGGGAAAATTTGCTGCTACTGTTGAAGCAGTGTACTTGAAAACCAATATCATGTCCATATTTGAGGATCTTGCACAGGATGATCAAGATTCTGTTCGGCTGCTTGCTGTTGAGGGTTGTGCAGCTCTTGGGAAATTGTTGGAGCCTCAAGATTGTGTTGCTCATATTCTTCCTGTTATAGTCAATTTCTCACAGGATAAGTCTTGGCGTGTACGTTACATGGTTGCAGATAAACTATATGAGCTTTGTGAAGTTGTTGGTCCCGAGCCCACCAGGTCAGACTTGGTTCCTGCATATGTTTGGCTACTGCGTGATAATGAGGCTGAAGTACGTATTGCTGCTGCTGGAAAAGTGAGCAAATTTTGCCGATTATTAAATCCAGAATTTGCTATTCAGCATATTCTACCATGTGTAAAGGATTTATCTACGGATTCATCTCAGCATGTACGCACTGCATTGGCTTCAGTTATAATGGAAATGGCACCAATTTTAGGGAAGGAGGCAACAATTGAGCAGCTTCTGCCTATTTTTCTTTCTCTTTTGAAAGATGAGTTTCCTGATGTCAGGTTGAACATTCTTAGCAAGCTTGACCAAGTGAACCAGGTAATTGGCATTGATCTGTTATCTCAGTCTCTTTTACCAGCCATTGTTGAGCTTGCCGAGGATCGGCACTGGAGGGTTCGACTTGCAATCATAGAATACATACCCTTATTGGCAAGTCAGTTAGGTGTAGGGTTTTTTGATGACAAACTTGGAGCTCTTTGCGTGCAATGGCTTAAAGACAAGGTATACTGTATTCGTGATGCAGCTGTTAATAATGTGAAACGCTTAGCAGAAGAATTTGGACCAGATTGGGCAATGCAGCACATTATTCCTCAGGTTCTGGACATAATTAATGATTCACACTATCTGTATCGGATGACCATTCTGCACGCAATTTCTCTGCTAGCTCCTGTTCTGGGCTCTGAGATTACTTGTTCAGAACTGCTCCCTCTGGTCATCAATGCATCAAAAGATAGGGTACCCAATATCAAGTTCAATGTTGCTAAAGTGTTGCAGTCTCTTGTTCCAATTGTTGATCAGTCCGTTGTTGATGAGACTATCCATCCTTGTTTGGTTGAGCTCAGCGAGGATCCAGATGTTGATGTTCGGTTCTTTGCCTCCCAGGCGCTTCAATCTGGCAATCAAGTCATGATGTCCAGCTAG 1758 0.4295 MVDESLYPIAVLIDELKNEDIQLRLNSVRKLSTIARALGEERTRKDLIPFLSEKNEDDDEVLLAVAEELGVFIPYVGGVEHANVLLPPLETLCTLEEICVRDKAVESLCRIGAQMREQELVEYFIPLVKRLAAGEWFTARVSSCGLFHIAYPTAPETVKTELRTVYGQLCQDEMPMVRRSAATNLGKFAATVEAVYLKTNIMSIFEDLAQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVADKLYELCEVVGPEPTRSDLVPAYVWLLRDNEAEVRIAAAGKVSKFCRLLNPEFAIQHILPCVKDLSTDSSQHVRTALASVIMEMAPILGKEATIEQLLPIFLSLLKDEFPDVRLNILSKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCVQWLKDKVYCIRDAAVNNVKRLAEEFGPDWAMQHIIPQVLDIINDSHYLYRMTILHAISLLAPVLGSEITCSELLPLVINASKDRVPNIKFNVAKVLQSLVPIVDQSVVDETIHPCLVELSEDPDVDVRFFASQALQSGNQVMMSS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1975 585 ProSiteProfiles HEAT repeat profile. 552 585 IPR021133 -
Glsi01g1975 585 ProSiteProfiles HEAT repeat profile. 318 356 IPR021133 -
Glsi01g1975 585 ProSiteProfiles HEAT repeat profile. 162 200 IPR021133 -
Glsi01g1975 585 Pfam HEAT repeats 359 457 - -
Glsi01g1975 585 Pfam HEAT repeat 240 269 IPR000357 GO:0005515
Glsi01g1975 585 ProSiteProfiles HEAT repeat profile. 396 434 IPR021133 -
Glsi01g1975 585 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 1 579 - -
Glsi01g1975 585 Gene3D - 2 577 IPR011989 -
Glsi01g1975 585 ProSiteProfiles HEAT repeat profile. 8 46 IPR021133 -
Glsi01g1975 585 ProSiteProfiles HEAT repeat profile. 474 512 IPR021133 -
Glsi01g1975 585 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 3 579 - -
Glsi01g1975 585 ProSiteProfiles HEAT repeat profile. 513 551 IPR021133 -
Glsi01g1975 585 ProSiteProfiles HEAT repeat profile. 357 395 IPR021133 -
Glsi01g1975 585 ProSiteProfiles HEAT repeat profile. 279 317 IPR021133 -
Glsi01g1975 585 ProSiteProfiles HEAT repeat profile. 201 239 IPR021133 -
Glsi01g1975 585 ProSiteProfiles HEAT repeat profile. 240 278 IPR021133 -
Glsi01g1975 585 SUPERFAMILY ARM repeat 5 577 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1975 Glsi-ChrGlsi01 83169184 83181463 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g1975 01 83169184 83181463 Glsi01g1975 01 83169184 83181463 ECH