Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1704 ATGTCTCGAATATTCTCGAGATGGAAGAAGCTGAAGGAAATGGCGATGCTTTCCTCTGCACAGACCCAGTTCGCTGTCTCGGCAAGAACTGGCCATAACTGGACAAGGTTCAACTTTCGGTTCAACCAAGTGTGCCCAATCTCGACCCACTTGAATTACCTTCACATCTCCACCCATAGACGCCGGGAATCGCTTATCGGCGTTCAGGAGCGACACAAGTGGGACCGTGGTGGCTCCGGTGATATCGAAGATCGGAATTCTCAGACTCGAAAGATTCGAGCTGAGGCTAATTGCCCACGTTGCACCAAGCACATGGACATCTTTTTCTCCGATCGCCCATTTCCCACTTCATCTGCTTCTGCTTCCAATTTAACCCCTCCAGTTCCTCTTCATGGAGAAGTGAGTTATCAGGCTATGCATCTCTGCCCCAATTGTAAAACTGCTTATTACTTCCGCCCTTATAACACTGCTCCTCTCCAAGGTACATTCGTAGAGATTGGTAGGGTCCCAAATAATAATGTTAATAATAGCAATAATAAATCGCCAAAGAGGATTGCCCATAGCAAAGATGACAGAGAAAGTAACAATGGTCGTGGTGGTGGCAGTGGAGTAGAAGATTATGCTCATAGAAGTAATAGCAATAATGGGTTCAGAGTATCACTCTGGAACTCCTTAAGATCGTCTAATGATGGAGATGGTAGAGAACCACCAGAAACCTGGTCTCCGCCACCTGATTCTTCTGATGGGAATGGGCTGGCTGTGCATACTCCGCCAGGTCCACCGTTTGCACCAGGGGTTAACGTTGTTCGGGCTTCAGGGCCACGGGAAGGTGGTTCAAGCGGCGGAGGCGGGGGTAATGGGGAGAAGAATACCTGGGGAGGTTCCAATTTGGGTAAGGATTTACCCACCCCAAAGGAGATCTGCAAGGGTCTTGATAAGTTTGTTATCGGCCAGGAAAGAGCCAAAAAGGTGCTTTCTGTTGCTGTTTATAACCACTATAAAAGAATACACCATGCCTCTTTACAGAAAGGTACTAGGTCAGGGGAAGATTCAGGAATTTCAAAAGCTCGAGATGACGACGACAATGTGGAGCTAGAAAAGAGTAATGTGCTCTTGATGGGTCCAACTGGTTCAGGGAAGACATTGCTTGCAAAAACTCTAGCTAGATTTGTGAATGTTCCATTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTTGAATCAATATTGTATAAACTACTTGTGGCAGCTGAGTTCAATGTTCAAGCCGCTCAACAAGGGATAGTTTATATTGACGAAGTTGACAAAATAACTAAGAAGGCTGAGAGCTTAAATATTAGCCGGGATGTTTCTGGCGAGGGTGTTCAGCAGGCATTATTAAAAATGTTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCAAGGAAGCATCCACGGGGGGATAACATACAGCTTGACACAAAGGATATTCTTTTTATATGTGGTGGAGCATTCGTTGATCTTGAAAAAACCATATCAGAGAGACGACAAGATTCTTCAATTGGTTTTGGAGCACCAGTTCGTTCCAATATGAGAACCAGTGGAGTAACAAATGCTGCAGTAACATCATCATTACTTGAGTCGGTGGAAAGTTCTGATCTTATTGCATATGGGCTCATACCTGAGTTTATTGGACGGTTTCCAATCTTAGTTAGTTTGTCAGCTTTAACTGAAGATCAACTTGTGCAGGTCCTAACAGAACCAAAAAATGCTCTTTGTAAGCAGTTCAAGAAATTAATTGGCATGAATAATGTAAAGCTACACTTCACAGAGAAAGCACTGAGATTGATTGCAATGAAAGCAATGGCCAAGAATACTGGGGCCAGGGGTTTAAGAGCCCTACTGGAGAACATCCTAAATGAAGCCATGTATGAGATTCCAGATGTTAAGACTGGGAACGACCAGGTTGATGCAGTTCTTGTCGATGAGGAGTCAGTAGGATCAGTAAATTCCTGTGGATGTGGAGGCAAACTTCTTTGTGGACACGGCGCTTTGGACCGCTACCTAACTAAGATGAAGGATTCAGTGGTTAACAAAGAGGTAGCTGAATCAGATGTACAAGAAGGGGAATCAGAGCTTTCATCAAGAGCCATGAGCATGTGA 2166 0.4451 MSRIFSRWKKLKEMAMLSSAQTQFAVSARTGHNWTRFNFRFNQVCPISTHLNYLHISTHRRRESLIGVQERHKWDRGGSGDIEDRNSQTRKIRAEANCPRCTKHMDIFFSDRPFPTSSASASNLTPPVPLHGEVSYQAMHLCPNCKTAYYFRPYNTAPLQGTFVEIGRVPNNNVNNSNNKSPKRIAHSKDDRESNNGRGGGSGVEDYAHRSNSNNGFRVSLWNSLRSSNDGDGREPPETWSPPPDSSDGNGLAVHTPPGPPFAPGVNVVRASGPREGGSSGGGGGNGEKNTWGGSNLGKDLPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIHHASLQKGTRSGEDSGISKARDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQLDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRSNMRTSGVTNAAVTSSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLVQVLTEPKNALCKQFKKLIGMNNVKLHFTEKALRLIAMKAMAKNTGARGLRALLENILNEAMYEIPDVKTGNDQVDAVLVDEESVGSVNSCGCGGKLLCGHGALDRYLTKMKDSVVNKEVAESDVQEGESELSSRAMSM 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1704 721 Gene3D - 295 575 IPR027417 -
Glsi01g1704 721 MobiDBLite consensus disorder prediction 170 302 - -
Glsi01g1704 721 CDD RecA-like_ClpX 302 574 - -
Glsi01g1704 721 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 93 695 - -
Glsi01g1704 721 Pfam AAA domain (Cdc48 subfamily) 366 570 IPR003959 GO:0005524|GO:0016887
Glsi01g1704 721 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 576 678 - -
Glsi01g1704 721 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 295 575 - -
Glsi01g1704 721 Gene3D - 576 674 - -
Glsi01g1704 721 SMART ClpB_D2_small_2 577 668 IPR019489 -
Glsi01g1704 721 MobiDBLite consensus disorder prediction 207 230 - -
Glsi01g1704 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 660 IPR027417 -
Glsi01g1704 721 MobiDBLite consensus disorder prediction 341 360 - -
Glsi01g1704 721 Pfam C-terminal, D2-small domain, of ClpB protein 577 647 IPR019489 -
Glsi01g1704 721 SMART AAA_5 366 528 IPR003593 GO:0016887
Glsi01g1704 721 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 298 667 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1704 Glsi-ChrGlsi01 78121387 78131019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1704 370 469 Miscellaneous Gene Families AT3G02450 36.634 6.25e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g1704 01 78121387 78131019 Glsi01g1704 01 78121387 78131019 ECH