Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0778 ATGGAGCTTCATCCACGTGGCACTGCCATATTGATGCCTAATTACGATAAGGCTAGCATTCAAAAGTTTCCGCTCTCCTCTACAGCAGAACTCCTAAGTAGTACCAAGGAAAAGGAGAAAGAAATGGCCTCCTCCGTGATTTCCTCCGCCGCTGTCACCACCATCAACCGTACCTCTCCGGCACAAGCCACCATGGTGGCACCGTTCACCGGTCTTAAGTCAGCCGCTAGCTTCCCAGTGACCAGAAAGGCCAACAATGACATTACCTCCATTGCAAACAATGGTGGGAGAGTACAATGCATGAAGGTGTGGCCTCCACTTGGCCTGAAGAAGTTCGAGACTCTTTCCTACCTGCCCCCACTGTCCACAGAGGCTTTGGGGAAGGAAGTAGATTACCTTCTAAGGAAGGGGTGGATTCCTTGCTTGGAATTCGAAGTGAATGACGCATTTGTCTACCGTGAGAACCACAGGTCACCAGGATACTATGACGGACGCTACTGGACCATGTGGAAGCTGCCCATGTTTGGCTGCAATGACTCTGCTCAGGTGTTGAAGGAGCTTGAGGAGGCCAAGAAGGAATACCCGTACGCTCACATCCGAATCATTGGATTCGACAACCGTCGCCAAGTGCAGTGCATCAGTTTCATTGCCTACAGGCCACCATCTGCTTAG 672 0.5119 MELHPRGTAILMPNYDKASIQKFPLSSTAELLSSTKEKEKEMASSVISSAAVTTINRTSPAQATMVAPFTGLKSAASFPVTRKANNDITSIANNGGRVQCMKVWPPLGLKKFETLSYLPPLSTEALGKEVDYLLRKGWIPCLEFEVNDAFVYRENHRSPGYYDGRYWTMWKLPMFGCNDSAQVLKELEEAKKEYPYAHIRIIGFDNRRQVQCISFIAYRPPSA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0778 223 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 110 221 IPR000894 -
Glsi01g0778 223 CDD RuBisCO_small 110 220 IPR000894 -
Glsi01g0778 223 Gene3D Ribulose bisphosphate carboxylase, small subunit 101 223 IPR036385 -
Glsi01g0778 223 SMART RuBisCO_small_2_a 111 220 IPR000894 -
Glsi01g0778 223 FunFam Ribulose bisphosphate carboxylase small chain, chloroplastic 101 223 - -
Glsi01g0778 223 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 43 87 IPR024680 -
Glsi01g0778 223 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 42 221 IPR024681 -
Glsi01g0778 223 PRINTS RuBisCO small subunit signature 194 220 IPR024681 -
Glsi01g0778 223 PRINTS RuBisCO small subunit signature 62 79 IPR024681 -
Glsi01g0778 223 PRINTS RuBisCO small subunit signature 138 153 IPR024681 -
Glsi01g0778 223 PRINTS RuBisCO small subunit signature 89 107 IPR024681 -
Glsi01g0778 223 PRINTS RuBisCO small subunit signature 160 189 IPR024681 -
Glsi01g0778 223 PRINTS RuBisCO small subunit signature 110 136 IPR024681 -
Glsi01g0778 223 Pfam Ribulose bisphosphate carboxylase, small chain 112 220 IPR000894 -
Glsi01g0778 223 SUPERFAMILY RuBisCO, small subunit 101 222 IPR036385 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0778 Glsi-ChrGlsi01 13700608 13701639 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0778 01 13700608 13701639 Glsi01g0778 01 13700608 13701639 ECH