Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0354 ATGGCGATTTCCCTTCACCTTTGCACTCTCCCTATTACTCGCAAGGAACTCGCCTTGCCGGAGAAGTTCACTAGAATCGGTGCTTTCCGGTGCGGGAAGCCTCTCTCCGTCAGATGCTCTGGCGATTCTTCGTCGTCTTCCGTGTCCGTCGAATCGGACTCGGATTTCGACGCCAAGGTGTTCCGGAAGAACCTAACCAGGAGTAAGAACTACAATCGGAAAGGGTTTGGACACAAGGAAGAGACACTTCAGCTTATGAATCGCCAGTATACCAGTGACATAATTAAGACTTTGAAGGAAAATGGATATGAGTATACATGGGGTAACACCACAGTGAGGCTGGCTGAAGCCTATGGCTTCTGTTGGGGAGTTGAAAGGGCTGTTCAAATTGCTTACGAGGCTAGAAAACAGTTTCCTACTGAGACAATCTGGCTTACCAATGAAATCATCCACAACCCAACCGTTAGTAAGCAATTAGAAGACATGAAAGTGCAGAATATTCCTGTGGAAGAAGGAAATAAGCGATTCGATGTTATCAACAAAGGTGATGTTGTGGTTTTGCCTGCTTTTGGAGCTGCAGTGGATGAGCTGTTGACTTTGAGCGAGAAAAATGTACAACTTGTTGATACTACTTGCCCGTGGGTTTCCAAGGTCTGGAATACTGTTGAGAAGCACAAGAAAGGAGATTATACCTCAATCATACATGGTACATATTCCCATGAGGAAACAGTAGCAACTGCATCTTTTGCTGGAACGTATATTATCGTGAAGAATATGGCAGAGGCTGAGTATGTTTGTGACTATATCCTTGGTGGTGAATTTAATGGATCCAGCTCAACAAAAGATGCATTTTTAGAGAAATTTAAGTTTGCAGTCTCTGCGGGGTTTGACCCAGACAGTGACCTGATAAAATTGGGCATTGCAAATCAGACAACAATGCTCAAGGGAGAGACTGAAGAGATTGGGAAACTAGTGGAGAGGACTATGATGCGCAAATTTGGCGTGGAGAACATCAATGAGCACTTCATAAGCTTCAACACCATTTGTGATGCTACTCAGGAGCGACAAGATGCTATGTACAAGATGGTGGAGAGAGATATGGATCTTATGTTAGTAGTTGGTGGGTGGAACTCGAGCAACACATCCCACCTGCAAGAGATAGCTGAGGAACGTGGAATTCCTTCTTACTGGGTTGACAGCGAGCAAAGAATTGGTCCAGGAAACAGAATAGCATACAAATTGAATCATGGTGAGCTCGTGGAGAAAGAAAACTGGCTACCACAAGGTCCAATAACAATTGGCGTAACATCTGGTGCATCCACACCTGACAAGGCTGTTGAAGATGTCCTCATCAAGGTGTTTGACTTGAAACGTGAAGAAGCATTGCAGGTAGCTTAA 1398 0.4456 MAISLHLCTLPITRKELALPEKFTRIGAFRCGKPLSVRCSGDSSSSSVSVESDSDFDAKVFRKNLTRSKNYNRKGFGHKEETLQLMNRQYTSDIIKTLKENGYEYTWGNTTVRLAEAYGFCWGVERAVQIAYEARKQFPTETIWLTNEIIHNPTVSKQLEDMKVQNIPVEEGNKRFDVINKGDVVVLPAFGAAVDELLTLSEKNVQLVDTTCPWVSKVWNTVEKHKKGDYTSIIHGTYSHEETVATASFAGTYIIVKNMAEAEYVCDYILGGEFNGSSSTKDAFLEKFKFAVSAGFDPDSDLIKLGIANQTTMLKGETEEIGKLVERTMMRKFGVENINEHFISFNTICDATQERQDAMYKMVERDMDLMLVVGGWNSSNTSHLQEIAEERGIPSYWVDSEQRIGPGNRIAYKLNHGELVEKENWLPQGPITIGVTSGASTPDKAVEDVLIKVFDLKREEALQVA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0354 465 CDD lytB_ispH 112 450 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Glsi01g0354 465 Gene3D - 212 345 - -
Glsi01g0354 465 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 2 463 - -
Glsi01g0354 465 Gene3D - 346 464 - -
Glsi01g0354 465 Pfam LytB protein 112 451 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Glsi01g0354 465 NCBIfam 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 112 452 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Glsi01g0354 465 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 110 457 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Glsi01g0354 465 Gene3D - 121 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0354 Glsi-ChrGlsi01 2888837 2893526 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0354 01 2888837 2893526 Glsi01g0354 01 2888837 2893526 ECH