Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0239 ATGTCTGTTTCGGAGCTGAAGGAGCGTCACTTGGAGGCCACAGAGACGGTGAACACTCTCAGGGAGCGGTTGAAGCAGAAGCGCCTCTCTTTGCTTGATACAGATATTTCTGGGTACGCTGGGTCTCAAGGTAAAACTCCAGTCAGATTTGAACCCACGGATCTGGTTTGCTGTAGAACGTTGCAGGGTCATACAGGAAAGGTGTATTGTTTGGATTGGACTACTGAAAAGAATCGAATTGTTAGTGCATCCCAAGATGGTCGATTAATAGTGTGGAATGCTCTAACAAGACAGAAAACTCATGCCATAAAGCTGCCTTGTGCATGGGTCATGACATGTGCTTTCTCACCCACTGGTCAGTCTGTTGCATATGGTGGTCTTGATAGTGTTTGCTCAATTTTCAATCTGAATTCCCCCAATGACAGGGATGGAAATCTGCCTGTTTCGCAAATGCTTAGTGGGCATAAGGGTTATGTTTCCTCTTGTCAGTATGTCCCCGATGAAGACACTCACCTAATTACCGGTTCTGGTGATCAGACATGTATTTTATGGGATATTACTACAGGCCTTAGAACATCTGTTTTTGGAGGTGAATTTCAATCTGGACATACTGCTGATGTACTTAGCATTTCTATTAATGGATCCAATTCAAGAATGTTTGTATCTGGTTCTTGTGATGCAACTGCCCGATTGTGGGATACTCGCATGGCAAGTCGAGCAGTGCGGACATTTCAAGGGCATGAGGGAGATGTTAATTCTGTGAAATTCTTTCCAGATGGAAATAGATTTGGAACTGGTTCAGATGATGGAACTTGTAGATTGTTTGACATTAGGACTGGACACCAACTTCAAGTATATTATCAGCAGCATGGGGATAATGACATCCCAGGGGTGACCTCCATTGCATTCTCCATATCAGGAAGGCTTCTTTTTGCTGGATACACAAATGGTGATTGCTATGTTTGGGACACTTTATTGGCAAAGGTGGTTTTAAATTTAGGAGCTCTCCAAAACTCTCATGAGGAAAGGATCAGTTGTTTGGGTTTGTCAGCTGATGGAAGTGCGTTATGTACAGGAAGTTATGACACAAACTTGAAGATATGGGCATTTGGAGGGCATAGAAGTGTGACTTGA 1134 0.4339 MSVSELKERHLEATETVNTLRERLKQKRLSLLDTDISGYAGSQGKTPVRFEPTDLVCCRTLQGHTGKVYCLDWTTEKNRIVSASQDGRLIVWNALTRQKTHAIKLPCAWVMTCAFSPTGQSVAYGGLDSVCSIFNLNSPNDRDGNLPVSQMLSGHKGYVSSCQYVPDEDTHLITGSGDQTCILWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDATARLWDTRMASRAVRTFQGHEGDVNSVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGDNDIPGVTSIAFSISGRLLFAGYTNGDCYVWDTLLAKVVLNLGALQNSHEERISCLGLSADGSALCTGSYDTNLKIWAFGGHRSVT 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0239 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Glsi01g0239 377 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Glsi01g0239 377 Pfam WD domain, G-beta repeat 201 233 IPR001680 GO:0005515
Glsi01g0239 377 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Glsi01g0239 377 Pfam WD domain, G-beta repeat 287 323 IPR001680 GO:0005515
Glsi01g0239 377 Pfam WD domain, G-beta repeat 151 185 IPR001680 GO:0005515
Glsi01g0239 377 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Glsi01g0239 377 Pfam WD domain, G-beta repeat 339 368 IPR001680 GO:0005515
Glsi01g0239 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
Glsi01g0239 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 377 - -
Glsi01g0239 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 242 IPR001680 GO:0005515
Glsi01g0239 377 CDD WD40 57 369 - -
Glsi01g0239 377 Gene3D - 3 369 IPR015943 GO:0005515
Glsi01g0239 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 280 - -
Glsi01g0239 377 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 3 369 IPR016346 GO:0007165
Glsi01g0239 377 SUPERFAMILY WD40 repeat-like 52 368 IPR036322 GO:0005515
Glsi01g0239 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Glsi01g0239 377 Coils Coil 3 23 - -
Glsi01g0239 377 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Glsi01g0239 377 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Glsi01g0239 377 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Glsi01g0239 377 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Glsi01g0239 377 SMART WD40_4 145 185 IPR001680 GO:0005515
Glsi01g0239 377 SMART WD40_4 330 369 IPR001680 GO:0005515
Glsi01g0239 377 SMART WD40_4 54 93 IPR001680 GO:0005515
Glsi01g0239 377 SMART WD40_4 279 323 IPR001680 GO:0005515
Glsi01g0239 377 SMART WD40_4 237 276 IPR001680 GO:0005515
Glsi01g0239 377 SMART WD40_4 192 233 IPR001680 GO:0005515
Glsi01g0239 377 SMART WD40_4 96 135 IPR001680 GO:0005515
Glsi01g0239 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 377 IPR001680 GO:0005515
Glsi01g0239 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Glsi01g0239 377 PIRSF GNBP_B 1 371 - -
Glsi01g0239 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 235 - -
Glsi01g0239 377 FunFam Guanine nucleotide-binding protein subunit beta 2 369 - -
Glsi01g0239 377 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Glsi01g0239 377 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Glsi01g0239 377 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Glsi01g0239 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0239 Glsi-ChrGlsi01 1905844 1910768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0239 125 370 Miscellaneous Gene Families AT5G08390 23.171 3.86e-12 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0239 01 1905844 1910768 Glsi01g0239 01 1905844 1910768 ECH