Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0216 ATGGCTTCTTCATGTGTGACCTTGAGAGCCAGTACCCATTTCACAAATGCAAGAAAAGGCGATTCTTTTCGTCAAGATAATGGGTTTTTAGGGGAAAGAATCAAGAGCTTGAATGGTAGTTCCTATGTGAATCAGTTGACTCCATTTTTTAGAAACGAGAAGAGGGTCAAGAAGATCAAAGCCAGCGTTGTTTCTGATGTTCTTACATCAAATAATACCACAGAATCTCTGACCTTGCAGGTGCCTTCATTTCTGAGACGGAAGGCTGAAGCCAAAAATGTACTTTCAATCATACTGGGAGGAGGTGCGGGAACTCAACTTTTTCCCCTTACCAAACGAGCCGCAACACCTGCTGTCCCTGTCGGTGGATGCTACAAACTCATAGACATCCCATTGAGTAACTGTATCAACAGTGGCATTAACAAAATATTTGTGCTGACCCAGTTCAACTCTGCATCCCTTAACCGCCACATCTCCCGGACCTACCATGGACATGGTATAAGCTTTGGGGATGGTTTTGTGGAGATTCTAGCAGCTACTCAAACAGCAGGAGAATCAGGGAAGAAGTGGTTCCAAGGAACTGCAGATGCTGTGAGACAATTTACATGGGTCTTTGAGGATGCCAAGAACTGCAACATTGAGTATGTAGTGATCTTGGCTGGAGATCATCTATACCGAATGAATTACATGGACCTTGTGCAGAGTCATGTTGACAGAAATGCTGATATTACAATTCCATGTGCAGCAGTGGGTGACAGCCGCGCACCCGATTATGGATTGGTCAAGGTAGATAGCAGAGGCCGCATCATCCATTTTTCAGAGAAACCAAAGGGCGCTGCTCTGAAAGCAATGCAAGTAGATACATCTCTTCTCGGGTTGTCACCCCACGATGCATTGAAGTCACCATATATTGCATCCATGGGGATTTATGTATTTAAGACAGATGTTTTACTCAAGCTTCTGAAATGGAGATATCCTACATCCAATGACTTTGGATCTGAAATCATTCCTGCAGCTGTGAGGGAACACGATGTTCAGGCATATTTTTTCAGAGACTACTGGGAAGACATTGGAACAATAAAGTCCTTTTACGACGCTAGCCTGGCTCTTACTGAAGAGAGTCCGAAGTTTGAATTTTATGACCCCAAGACCCCCATTTTCACATCTCCTCGATTCCTGCCACCAACAAAGATGGATAAGTGTCGGATTGTGGATGCAATTATCTCCCACGGATGTTTCCTGCGAGAATGTACAGTCCAGCATTCCATTGTGGGTGAACGTTCACGTTTGGATTATGGTGTTGAGCTTCAGGACACCGTAATGATGGGAGCAGACCATTACCAAACTGAATCTGAAATTGCTTCTCTGCTGGCAGAAGGAAAGGTCCCAATTGGGATTGGAGAGAATTCCAAAATTAGGAACTGTATAATTGACAAAAATGCAAAGATCGGGAAAGATGTTGTCATTATGAACAAAGATGGTGTTCAAGAAGGAGATAGACCAGAAGATGGATTTTGCATTCGATCAGGAATCGCCATCGTCTTGGAGAAGGCAACAATACAAGATGGCACGGTGATATAA 1581 0.4377 MASSCVTLRASTHFTNARKGDSFRQDNGFLGERIKSLNGSSYVNQLTPFFRNEKRVKKIKASVVSDVLTSNNTTESLTLQVPSFLRRKAEAKNVLSIILGGGAGTQLFPLTKRAATPAVPVGGCYKLIDIPLSNCINSGINKIFVLTQFNSASLNRHISRTYHGHGISFGDGFVEILAATQTAGESGKKWFQGTADAVRQFTWVFEDAKNCNIEYVVILAGDHLYRMNYMDLVQSHVDRNADITIPCAAVGDSRAPDYGLVKVDSRGRIIHFSEKPKGAALKAMQVDTSLLGLSPHDALKSPYIASMGIYVFKTDVLLKLLKWRYPTSNDFGSEIIPAAVREHDVQAYFFRDYWEDIGTIKSFYDASLALTEESPKFEFYDPKTPIFTSPRFLPPTKMDKCRIVDAIISHGCFLRECTVQHSIVGERSRLDYGVELQDTVMMGADHYQTESEIASLLAEGKVPIGIGENSKIRNCIIDKNAKIGKDVVIMNKDGVQEGDRPEDGFCIRSGIAIVLEKATIQDGTVI 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0216 526 SUPERFAMILY Nucleotide-diphospho-sugar transferases 93 488 IPR029044 -
Glsi01g0216 526 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 190 198 IPR005836 GO:0005978|GO:0008878
Glsi01g0216 526 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 52 526 IPR011831 GO:0005978|GO:0008878
Glsi01g0216 526 SUPERFAMILY Trimeric LpxA-like enzymes 388 526 IPR011004 -
Glsi01g0216 526 CDD LbH_G1P_AT_C 394 520 - -
Glsi01g0216 526 FunFam Glucose-1-phosphate adenylyltransferase 392 526 - -
Glsi01g0216 526 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 305 315 IPR005836 GO:0005978|GO:0008878
Glsi01g0216 526 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 80 391 IPR029044 -
Glsi01g0216 526 CDD ADP_Glucose_PP 97 357 - -
Glsi01g0216 526 NCBIfam glucose-1-phosphate adenylyltransferase 94 490 IPR011831 GO:0005978|GO:0008878
Glsi01g0216 526 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 100 119 IPR005836 GO:0005978|GO:0008878
Glsi01g0216 526 Gene3D Hexapeptide repeat proteins 392 526 - -
Glsi01g0216 526 FunFam Glucose-1-phosphate adenylyltransferase 76 391 - -
Glsi01g0216 526 Pfam Nucleotidyl transferase 96 372 IPR005835 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0216 Glsi-ChrGlsi01 1724205 1728465 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0216 01 1724205 1728465 Glsi01g0216 01 1724205 1728465 ECH