Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0195 ATGGTGGATGCTGACATGGACGGCCAAGATTGCATCACATAAAAAGTTAGTGGGTTTTCGCGGAAGGATTTTGGGTCGCAGTTCTTGCAAACTTCTGCGCTTCTTCGGTTTGAGATCGGTGACTGTTCCACTGCCCTTCCAAAAGAATTGGTTGGCAGTCCTTGTTTTCAGACAGTACCTTTAAGTTTCTGTTGGCTGTTGAATTCTAATATGGCCAGTGATTTTGCTGTTATGTCCAATGGCAATGTCAACTCACAACCTAATCCACAGAGGACTTACCAAGTGGTGGTGGCTGCAACCCGGGATATGGGTATTGGCCAAGATGGAAAATTACCTTGGAAATTACCTACTGATCTCAAATTTTTTAAGGAGATCACTGTGACAACATCTGATCCTGGGAAGAAGAATGCGGTTTTAATGGGTAGAAAAACATGGGAGAGTATCCCTCTTGAGAATCGTCCTCTTCCAGGTCGCCTCAATGTTGTTCTGACTCGCTCGGGAAGTTTTGATATTGCAACTGCAGAGAATGTTGTTATATGCGGAAGCATGTCTTCTGCTTTGGAATTGTTAGCAGCTTCTCCTTACTGTCTATCGATTGAGAAAGTATTTGTTATAGGAGGGGGCCAGATATTTAGAGAAGCTCTTAATGCACAAGCATGTGAAGCTATACACATTACAGAAATTGAGACAAGCATTGACTGTGATACTTTTATGCCTCCAATTGATTCCTCTGTATTTCAGCCTTGGCACTCCTCCTTTCCTAGGATGGAAAATGACATCCGCTATTGTTTTACCACTTATGTGCGGGTAAGGAGTTCTGCAGCAGAATCACTGAGTCAGAATTCTGATCCAATTTTTGATAGTAGATCAGATTCCATAAAATTTGAGGTCCAGAAGTTCTCTTTCCTTCCTAAAGTGATTTTTGAGAGACATGAGGAGTACACGTATCTCAGAATGGTTCAAGATATCATCTCTGAAGGTACTTCTAAGGATGATAGGACAGGGACTGGTACCTTATCAAAATTTGGTTGCCAGATGAGGTTCAATTTGCGGAGAAGCTTTCCTCTTCTAACAACTAAGAAAGTTTTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATTAGTGGTTCAACAAATGCCAAGGTGCTGCAGGAAAAAGGCATCCATATATGGGATGGCAATGCATCCAGAGAATACCTTGATAGCATTGGATTGGCAGACAGAGAAGAGGGTGACTTAGGACCAGTATATGGATTTCAGTGGAGGCACTTTGGTGCCATGTATAGTGATATGCATGCTGACTACTCTGGCAAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAACATAATCCTGATGATCGACGGATCATTCTCTCAGCATGGAATCCAGTTGATCTTAAATTAATGGCACTTCCCCCCTGCCACATGTTTGCACAGTTCTATGTAGCAAATGGGGAGTTATCTTGTCAAATGTATCAGCGATCTGCAGACATGGGCTTGGGTGTGCCATTTAATATTGCGTCTTATGCTCTTCTGACATGCATTATTGCTCATGTTTGTGAACTTGTTCCAGGTGATTTTGTCCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTGAGACCTTTGCAAGAGCAGCTCCAGAACCTGCCTAAACCTTTTCCAACATTGGAAATAAATCCAGAGAAGAAGGATATAGATTCTTTTGTGGCTGCTGATTTCAAACTCAAAGGCTATGACCCTCACCAGAAGATAGAAATGAAGATGGCTGTGTAG 1791 0.4199 MVDADMDGQDCITXKVSGFSRKDFGSQFLQTSALLRFEIGDCSTALPKELVGSPCFQTVPLSFCWLLNSNMASDFAVMSNGNVNSQPNPQRTYQVVVAATRDMGIGQDGKLPWKLPTDLKFFKEITVTTSDPGKKNAVLMGRKTWESIPLENRPLPGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYCLSIEKVFVIGGGQIFREALNAQACEAIHITEIETSIDCDTFMPPIDSSVFQPWHSSFPRMENDIRYCFTTYVRVRSSAAESLSQNSDPIFDSRSDSIKFEVQKFSFLPKVIFERHEEYTYLRMVQDIISEGTSKDDRTGTGTLSKFGCQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDSIGLADREEGDLGPVYGFQWRHFGAMYSDMHADYSGKGFDQLLDVINKIKHNPDDRRIILSAWNPVDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCIIAHVCELVPGDFVHVIGDAHVYRNHVRPLQEQLQNLPKPFPTLEINPEKKDIDSFVAADFKLKGYDPHQKIEMKMAV 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0195 596 CDD TS_Pyrimidine_HMase 315 549 IPR023451 -
Glsi01g0195 596 Pfam Thymidylate synthase 315 596 IPR023451 -
Glsi01g0195 596 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 104 126 IPR017925 GO:0004146
Glsi01g0195 596 PRINTS Thymidylate synthase family signature 354 375 IPR000398 GO:0004799|GO:0006231
Glsi01g0195 596 PRINTS Thymidylate synthase family signature 529 546 IPR000398 GO:0004799|GO:0006231
Glsi01g0195 596 PRINTS Thymidylate synthase family signature 447 466 IPR000398 GO:0004799|GO:0006231
Glsi01g0195 596 PRINTS Thymidylate synthase family signature 473 488 IPR000398 GO:0004799|GO:0006231
Glsi01g0195 596 PRINTS Thymidylate synthase family signature 491 517 IPR000398 GO:0004799|GO:0006231
Glsi01g0195 596 Gene3D Dihydrofolate Reductase, subunit A 74 271 IPR024072 -
Glsi01g0195 596 FunFam Possible thymidylate synthase 307 596 - -
Glsi01g0195 596 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 92 269 IPR001796 GO:0004146|GO:0046654
Glsi01g0195 596 Hamap Thymidylate synthase [thyA]. 313 596 IPR000398 GO:0004799|GO:0006231
Glsi01g0195 596 PANTHER THYMIDYLATE SYNTHASE 1 115 596 IPR045097 GO:0016741
Glsi01g0195 596 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 76 270 - -
Glsi01g0195 596 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 306 596 IPR036926 -
Glsi01g0195 596 SUPERFAMILY Dihydrofolate reductase-like 88 269 IPR024072 -
Glsi01g0195 596 NCBIfam thymidylate synthase 315 596 IPR000398 GO:0004799|GO:0006231
Glsi01g0195 596 CDD DHFR 96 268 IPR001796 GO:0004146|GO:0046654
Glsi01g0195 596 PIRSF DHFR-TS 75 596 IPR012262 GO:0004146|GO:0004799|GO:0006730
Glsi01g0195 596 ProSitePatterns Thymidylate synthase active site. 458 486 IPR020940 GO:0004799|GO:0006231
Glsi01g0195 596 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 297 596 IPR036926 -
Glsi01g0195 596 Pfam Dihydrofolate reductase 94 269 IPR001796 GO:0004146|GO:0046654
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0195 Glsi-ChrGlsi01 1591437 1598321 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0195 01 1591437 1598321 Glsi01g0195 01 1591437 1598321 ECH