Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0163 ATGCTATCGTCTCCAGTAACCCGTAGTGCAGATGTCTCCCGCAGCACGTTCTTCTTAGATTCTTCCTCATCTCCATTCTGCAGCAGCCAGCAGTACCACAATCTTCATTCGGCTGAAACGTTAATTCAGAAGGGGAAAATGGCAAGCTTATTATTGGGAACCATTCTGAAACACCCAGAAGAAATCTACCCCTTGTTGAAGTTGAAGATGGTGATAAGGAACGCAGAGAAGCACATACCAGATCAGCAACCACATTGGGCTTTTTGCTATACCATTCTTCACAAGGTGGCTCGAAGCTTTGCCCTCACCATTCAGCAACTTGATTCGGAGCTTCGCAATTCTATACTCATATTTTATTTGGTTCTTAGAGCCTTGGACACTGTTGAGGACGATACAAGTTTGCCCTCAAAAGTGAGAGTACCTATTTTGCAGGATTTTTATCGCCATATAGATGATCCACGCTGGGAATTTTCCTGTGGTACGGAAGACTGTAAGGTTCTTATGGAGCAGTTTCATCATGTTCGAACTGCCTTTCTTGAGCTCAAACGAAGTCATCAGGATGTGATTAAGGAAGTTACCAAAAAGATGGGAGCCGGAATGGCAAAATTTATTTGCAAGGAGATAGAAACGATAGAAGATCTGAATGAGTATGCACATTACGTAGCTGGGCTAGTAGGCTTAGGACTTTCTAAGCTATTTTATGCCTCTGGGTTGGAGGATTTGGCTCCAGAATCGCTCTCAAATTCAATGGGTTTACTCCTTCAGAATGCAAACATCATTCGTGATTACTTGGAAGATATTAATGAGATTCCAATGCCTCGCACGTTCTGGCCCCGTCAAGTTTGGAGTAAATATGTAAACAAACTCGAGGACCTGAAAGATGAGGAGAATTCGGAGAAGGCATTGCAATGTTTGAACGAAATGGTGACAAATGCTTTAGTGCATGTCGAACACTGCCTCAAGTATATTTCTGCTTTGAGAGATCCAGCTATTTTCAGATTTTGTGCCGTTCCTCAGGTCATGGCAATTGGAACCCTAGCTTTGTGTTACAACAACATTGACGTTTTCAGAGTTGCTTTGAAATTGAGGCGGGGTCTCACCGCTAAACTCATCCACCAAACAAGAACAATGTCAGACGTATACGGGGCCTTTTTAAAATTCACTTCGATTATGAAAGCTAAGGTTGAGAAGCATGACCCTAATGCCTCCACCATACTCCTCAGGATAGAGGCCATCCAGAAAATCTGCAGGGACAACTCTATAATATTAAATAATAGGGAATATCACACAGTTAGCAAAGAGCTAAAATATCATTCACCTCAATTTTTAAAAGAATCTGACGACAAAACAAGGAGTTGCTATCTATGTAGCCATATGCTTGGGATTTGCATATTTGTATTCCAGCCTCCTCAATCTATATTGACTTATTTTCTTGGGCCAAAATGCAAAATCCATGACGTTATTTGGGCCTAG 1473 0.4182 MLSSPVTRSADVSRSTFFLDSSSSPFCSSQQYHNLHSAETLIQKGKMASLLLGTILKHPEEIYPLLKLKMVIRNAEKHIPDQQPHWAFCYTILHKVARSFALTIQQLDSELRNSILIFYLVLRALDTVEDDTSLPSKVRVPILQDFYRHIDDPRWEFSCGTEDCKVLMEQFHHVRTAFLELKRSHQDVIKEVTKKMGAGMAKFICKEIETIEDLNEYAHYVAGLVGLGLSKLFYASGLEDLAPESLSNSMGLLLQNANIIRDYLEDINEIPMPRTFWPRQVWSKYVNKLEDLKDEENSEKALQCLNEMVTNALVHVEHCLKYISALRDPAIFRFCAVPQVMAIGTLALCYNNIDVFRVALKLRRGLTAKLIHQTRTMSDVYGAFLKFTSIMKAKVEKHDPNASTILLRIEAIQKICRDNSIILNNREYHTVSKELKYHSPQFLKESDDKTRSCYLCSHMLGICIFVFQPPQSILTYFLGPKCKIHDVIWA 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0163 490 ProSitePatterns Squalene and phytoene synthases signature 1. 217 232 IPR019845 GO:0016765
Glsi01g0163 490 Gene3D Farnesyl Diphosphate Synthase 83 420 IPR008949 -
Glsi01g0163 490 SFLD Isoprenoid Synthase Type I 84 374 - -
Glsi01g0163 490 NCBIfam squalene synthase 85 416 IPR006449 GO:0004310|GO:0008610
Glsi01g0163 490 CDD Trans_IPPS_HH 87 369 IPR033904 GO:0004311
Glsi01g0163 490 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 52 438 IPR044844 GO:0004311
Glsi01g0163 490 FunFam Squalene synthase 1 83 419 - -
Glsi01g0163 490 SFLD Squalene/Phytoene Synthase Like 84 374 IPR002060 GO:0009058
Glsi01g0163 490 Pfam Squalene/phytoene synthase 94 358 IPR002060 GO:0009058
Glsi01g0163 490 ProSitePatterns Squalene and phytoene synthases signature 2. 250 278 IPR019845 GO:0016765
Glsi01g0163 490 SUPERFAMILY Terpenoid synthases 85 416 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0163 Glsi-ChrGlsi01 1327828 1335549 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0163 01 1327828 1335549 Glsi01g0163 01 1327828 1335549 ECH