Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0123 ATGGAGACTAGTTCAGACACACCCAAGAAGAAAAGTGGTGGAAATGGGCAGGTTCTGGACGGTTCGAATATAATGGAGTTGGTTGGGAACGAGCAAGTGTTCAGCAATTTCGTGGACCATAAGTTCCAGGAGTTGGATAGGGACAGAGATGGGAAGCTCTCTGTGAAGGAGCTTGAGCCTGCTGTTGCTGATATTGGTGCTGCTTTAGGGTTACCCGCTCAGGGTAGTAATCCTGATTCTGATCACATCTATTCCGAGGTCTTGAATGAATTTACCCATGGCAAGCAAGAGAAAGTGAGCAAGACTGAGTTCAAAGAGGTACTCTCAGACATTCTGTTGGGCATGGCTGCTGGGCTGAAGCGAGACCCAATTGTTATACTCCGCATAGATGGGGAAGATCTCCTTGAGTTTGTGAACGGGCCAAGTTATGAAGCAGAAATGGCATCCATATTCTCCCAGATTGAGTGTCCTGATGGATCACTTCGTGAACATATGATGGAAGCTCTGGGTAAACTCACTGTTGATCAGGGAATTCCTCCTACTTCAGATTCTTGGGTTTTTAACAACATTGTGGAACCGGCTCTGCAATCTCTAGCTGGCCCTGATTGGGATAAACCTGTTTCTCAAGAGACATTTCTGGCAGAATTTAAGAAAGTGGCATCAAGTGTGGCTGATCGTCTGAAGGAACAACCTGTCATAGTTGCCCACAGTGAGAACACCTTTGATGGCAGTGGCATTAAGAGACTATTATCCAACAAGTTCGAATTAGACAAGATATTGAACTCGGCTTTAGAAAATCTACCAAGAGATCGCAATGGAAAAATCTCGAAGGAGTATCTGCGGGTGGCACTAGATGTGGTGTCTCCATCTGCTGGTTTGCCTCCAGTTGGTGCAATTGAAGAGATGGATAAGGTTATTGGTGAAGTATGTAAGATGTTAAATGCAGATGATGGGAAGATGGTTAAAGAAGACGAATTCAAGAAAATATTAACTGAAATATTGGGGAGTATCATGCTGCAGTTAGAGGGCAATCCCATATTAGTTTCTTCAAATTCAGTTGTGCACGAGCCTCTAGGATCTTCTTCTACACTTTTGCAGCCATCTTCTAGCGAAGCTGCATAG 1122 0.4439 METSSDTPKKKSGGNGQVLDGSNIMELVGNEQVFSNFVDHKFQELDRDRDGKLSVKELEPAVADIGAALGLPAQGSNPDSDHIYSEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVNGPSYEAEMASIFSQIECPDGSLREHMMEALGKLTVDQGIPPTSDSWVFNNIVEPALQSLAGPDWDKPVSQETFLAEFKKVASSVADRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKILNSALENLPRDRNGKISKEYLRVALDVVSPSAGLPPVGAIEEMDKVIGEVCKMLNADDGKMVKEDEFKKILTEILGSIMLQLEGNPILVSSNSVVHEPLGSSSTLLQPSSSEAA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0123 373 Gene3D - 30 335 - -
Glsi01g0123 373 ProSiteProfiles EF-hand calcium-binding domain profile. 255 290 IPR002048 GO:0005509
Glsi01g0123 373 MobiDBLite consensus disorder prediction 1 21 - -
Glsi01g0123 373 SUPERFAMILY EF-hand 41 344 IPR011992 -
Glsi01g0123 373 Pfam EF-hand domain pair 41 107 IPR002048 GO:0005509
Glsi01g0123 373 ProSiteProfiles EF-hand calcium-binding domain profile. 33 68 IPR002048 GO:0005509
Glsi01g0123 373 SMART efh_1 305 333 IPR002048 GO:0005509
Glsi01g0123 373 SMART efh_1 37 65 IPR002048 GO:0005509
Glsi01g0123 373 SMART efh_1 259 287 IPR002048 GO:0005509
Glsi01g0123 373 ProSitePatterns EF-hand calcium-binding domain. 46 58 IPR018247 -
Glsi01g0123 373 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 129 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0123 Glsi-ChrGlsi01 1001059 1005700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0123 17 370 EF-hand Containing Proteins AT4G38810 69.188 3.00e-176 493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0123 01 1001059 1005700 Glsi01g0123 01 1001059 1005700 ECH