Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0120 ATGGGAGAGGAAGATATTTTGAAGGGCGTGACAAAGAAGGCCAACCCTCGCAAAGCTACAATTTTGGCTCTTGGCAAAGCTTTCCCTCATCAGCTTGTCATGCAAGAGTATTTAGTTGATGGATATTTCAAAAACACCAATTGTGATAATCCGGAGCTTAAACAGAAGCTGACTAGACTATGCAAGACGACCACAGTTAAAACAAGGTACGTGATCATGTCTGAGGAGATACTAGAGAAGTACCCAGAACTCACACTTGAAGGCCTTCCAACTGTAAAGCAACGGTTAGAAATCTGCAATAAGGCAGTGACAGAAATGGCCATTGAAGCTTCCCAAGTTTGCATCAAGAATTGGGGAAGACCCATATCGGACATAACCCACCTGGTTTATGTCTCTTCAAGTGAGGCTAGACTACCTGGGGGTGACCTTCACCTAGCCAAAGGGCTCGGACTCAGTCCCGAGACTCAACGAACCATGCTCTATTTCATGGGTTGCTCTGGAGGGGTGGCTGGCCTACGTGCTGCTAAAGACATAGTTGAGAACAACCCCAACAGCCGAGTTCTTCTTGCTACTTCTGAAACTACCATTATTGGGTTCAAACCACCGAGTGCAGATAGACCCTACGATCTTGTTGGGGTAGCACTATTTGGAGATGGGGCTGGTGCCATGATAATTGGTTCAGACCCAATATTGGGAATTGAAAGACCTCTCTTTGAGCTTCATACAGCAGTTCAAAAGTTTCTGCCAGACACTGAGAAGAAGATTGATGGGAGGCTAACAGAGGAGGGTATAAGCTTCAAACTAGCAAGGGAGCTTCCTCAGATAATTGAAGATAACATTGAGGGATTCTGTGAGAAGTTGATGGGAGTTGCTGGGTTCCAGAAAGAGGAGTATAACAAGCTATTCTGGGCTGTTCATCCAGGTGGCCCGGCAATATTGAATCGCATCGAAAAGCGACTTGATTTGTTGCCGGAAAAGTTGCAAGCAAGTAGAAGAGCTCTAATGGATTATGGCAATGCTAGCAGCAATACCATTGTATATGTGCTGGAGAATATGATAGAAGGTCTGAAAATTAGAAATGATGGAGGAGGAGGAGATGCTGAAACTGAATGGGGCTTGATACTTGCTTTTGGACCAGGGATTACTTTTGAGGGAATTCTAGCGAGGAATCTAAGTGCTTGA 1182 0.4501 MGEEDILKGVTKKANPRKATILALGKAFPHQLVMQEYLVDGYFKNTNCDNPELKQKLTRLCKTTTVKTRYVIMSEEILEKYPELTLEGLPTVKQRLEICNKAVTEMAIEASQVCIKNWGRPISDITHLVYVSSSEARLPGGDLHLAKGLGLSPETQRTMLYFMGCSGGVAGLRAAKDIVENNPNSRVLLATSETTIIGFKPPSADRPYDLVGVALFGDGAGAMIIGSDPILGIERPLFELHTAVQKFLPDTEKKIDGRLTEEGISFKLARELPQIIEDNIEGFCEKLMGVAGFQKEEYNKLFWAVHPGGPAILNRIEKRLDLLPEKLQASRRALMDYGNASSNTIVYVLENMIEGLKIRNDGGGGDAETEWGLILAFGPGITFEGILARNLSA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0120 393 CDD CHS_like 19 387 - -
Glsi01g0120 393 Gene3D - 6 236 IPR016039 GO:0016746
Glsi01g0120 393 SUPERFAMILY Thiolase-like 15 234 IPR016039 GO:0016746
Glsi01g0120 393 FunFam Chalcone synthase 1 237 392 - -
Glsi01g0120 393 FunFam Chalcone synthase 2 3 236 - -
Glsi01g0120 393 Pfam Chalcone and stilbene synthases, C-terminal domain 239 391 IPR012328 -
Glsi01g0120 393 PIRSF PKS_III 8 393 IPR011141 GO:0009058|GO:0016747
Glsi01g0120 393 SUPERFAMILY Thiolase-like 236 389 IPR016039 GO:0016746
Glsi01g0120 393 Gene3D - 237 391 IPR016039 GO:0016746
Glsi01g0120 393 Pfam Chalcone and stilbene synthases, N-terminal domain 12 229 IPR001099 -
Glsi01g0120 393 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 12 391 IPR011141 GO:0009058|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0120 Glsi-ChrGlsi01 993118 995280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0120 79 349 Miscellaneous Gene Families AT4G34250 27.000 1.94e-13 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0120 01 993118 995280 Glsi01g0120 01 993118 995280 ECH