Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2082 ATGGCTGGTTTGCAAAGATCTGCAGTGTCATTCAGGAGGCAAGGTTCATCTGGGTTTGTTTGGGATGACAGGTTCTTGTCTGAGGAAATCAACAAAGCTGCCAACAACAACCAAACAGAACAAAACCAAGACAAGGACAAGCCTCTTGAGACTAACAAAGATCTTCACGCGCCACCACCACCACCTCCTCCACCAATCAACACCACCGTCGAGAGAAGCCGCTCCAACGGCGGAGGCCGCGGCTACCGCACCGGAAAAGTCTCCCCGGCGATCGAGCCGCCGTCCCCTAAGCTCTCCGCATGTGGCTGCTGCAGCGCTTTTGGAAAAACAGGGGACAAGGGCGGCCACCCGACAAAAAAAGCCGGCAAGCATCGATCGAGTCCGTATCTCACCTACAGTGAAGGTTTCGACCCAGTTATCCCACGTTCCGGGTTGAGCAGAACCCAAACCAGAACCAGATCTAAACGGGTCATTTCTGTTGGTGACTATGGTGCAAAAGGGGATGGCCTTCATGATGACACCAAGGCCTTCCTGGAAGCTTGGAAAACTGCTTGTTCTCTCTCTGGATTTGTTAATGTTGATTTTCCATATGGGAAAACTTTTCTTGTCCATCCACCAGTTGACATTGGTGGGCCTTGTCGATCAAAGATCACATTAATGATATCAGGTACAATAGTTGCTCCAAAAGATCCTGGAGTGTGGCGTGGCTTAAATCAGCGAAGATGGCTATACTTCCATGGGGTGAATCACCTTACTATAGATGGTGGAGGAAGGATCAACGGAATGGGGCAGGAATGGTGGGCTAGATCTTGCAAAATTAACTCCACGAATCCATGTCATCATGCTCCAACGGCCCTCACTTTTCATAAATGCAAGAACCTTAAAGTCAGAAACCTTATGCTGCTAAATAGCCAACAGATGCACATGGCATTCACTAGTTGTATGCGGGTCAGTGCGTCCCATCTCAAAGTATTAGCCCCAGCTTCCAGCCCTAATACAGACGGAATCCACATTAGTGTGACAAAGGGTATTGAGGTCAGGGACAGTGTAATTAGAACGGGTGATGACTGCATCTCAATAGTCCGAAATTCTTCACGGGTCTGGATCAGAAACATTACTTGTGGTCCAGGCCATGGCATAAGCATTGGTAGCTTGGGAAAATCAAAGGCATTGGAGAAGGTGCAAAATATAGATGTTAATGGAGCTTACCTTTCCAACACTGATAATGGGGTGAGAATCAAAACATGGCAGGGTGGGCAGGGTCTTGCCTCCAAGATCACATTTCAGAATATCCTGATGGAAAATGTGTCAAACCCAATAATAATAGACCAATACTACTGTGATTCAAGACATCCATGTAAGAACCAGACCTCGGCTGTCAAAGTAGGGAACATATCCTTCATTAATATCCAAGGAACTTCAGCCACGGAAGAAGCAATTAAGTTTGCCTGCAGTGATGCCTCTCCATGTGAAGGATTATATCTGGAAAACATTTATCTAACTCCTGCATCATGCTACGGAGGAAGTACTACATCTTACTGCTGGCAAGCCTATGGTTCTACTCCGGGTGTGGTGAACCCTCCTGCCTGTTTTTCAAGCAATAACAATTTCATTAGACAGAAAGTGTGGTTGGAGTCAAACCCTGCTATGGATTCGGTCTTAACAGAATAA 1671 0.468 MAGLQRSAVSFRRQGSSGFVWDDRFLSEEINKAANNNQTEQNQDKDKPLETNKDLHAPPPPPPPPINTTVERSRSNGGGRGYRTGKVSPAIEPPSPKLSACGCCSAFGKTGDKGGHPTKKAGKHRSSPYLTYSEGFDPVIPRSGLSRTQTRTRSKRVISVGDYGAKGDGLHDDTKAFLEAWKTACSLSGFVNVDFPYGKTFLVHPPVDIGGPCRSKITLMISGTIVAPKDPGVWRGLNQRRWLYFHGVNHLTIDGGGRINGMGQEWWARSCKINSTNPCHHAPTALTFHKCKNLKVRNLMLLNSQQMHMAFTSCMRVSASHLKVLAPASSPNTDGIHISVTKGIEVRDSVIRTGDDCISIVRNSSRVWIRNITCGPGHGISIGSLGKSKALEKVQNIDVNGAYLSNTDNGVRIKTWQGGQGLASKITFQNILMENVSNPIIIDQYYCDSRHPCKNQTSAVKVGNISFINIQGTSATEEAIKFACSDASPCEGLYLENIYLTPASCYGGSTTSYCWQAYGSTPGVVNPPACFSSNNNFIRQKVWLESNPAMDSVLTE* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2082 556 SUPERFAMILY Pectin lyase-like 153 531 IPR011050 -
Dod10g2082 556 Gene3D - 141 550 IPR012334 -
Dod10g2082 556 MobiDBLite consensus disorder prediction 1 94 - -
Dod10g2082 556 SMART pbh1 65 86 IPR006626 -
Dod10g2082 556 SMART pbh1 423 444 IPR006626 -
Dod10g2082 556 SMART pbh1 364 384 IPR006626 -
Dod10g2082 556 SMART pbh1 394 415 IPR006626 -
Dod10g2082 556 SMART pbh1 341 362 IPR006626 -
Dod10g2082 556 Pfam Domain of unknown function (DUF4666) 1 112 IPR031421 -
Dod10g2082 556 Pfam Glycosyl hydrolases family 28 185 503 IPR000743 GO:0004650|GO:0005975
Dod10g2082 556 ProSitePatterns Polygalacturonase active site. 371 384 IPR000743 GO:0004650|GO:0005975
Dod10g2082 556 PANTHER - 131 538 - -
Dod10g2082 556 PANTHER GLYCOSIDE HYDROLASE, FAMILY 28 131 538 - -
Dod10g2082 556 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2082 Dod-Chr10 42739453 42747046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2082 150 417 Glycoside Hydrolase AT1G80170 63.060 7.93e-125 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2082 K01213 - gmx:100819195 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g2082 10 42739453 42747046 Dod10g2082 10 42739453 42747046 ECH
Dod10g2082 10 42739453 42747046 Dod06g2516 06 54203682 54204683 PCT