Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1018 ATGGTGGATCGTTTTAGGCCTGTTTCGATTGAGGAATTGCCTTCACATTTGATTCTAGAAGTTCTGTGCTCAGGAAGGCTAAGTGCATTAGACCTTGTTTGTTTGGAATTGACTTCAAAAACCTTTGGTGGTGGTCATTTCTTGTCCCCTTTGAAGTTTAAGTCCTTGGTGGAGTTTGCAGCATTTCAGCTGTGTGCCTCCCATGTTATCTACTCTAGTATGGGCTTGAATTCTCAGAAGGAGTTGTATGATCGGTGCGGCGCGAATTGGAAGCGGGTCCTGAGGTTCTTGCAGTCTGTGGAACAATCATCTGAGACGGTGGAGACGTCATCAGGCAATATGCAAATTACAACTGGAAAGTATCACACCTTGTTGATCAGCAATTCCTCTGTGTACTCTTGTGGTTCTGGTTTGTGTGGTGTACTTGGTCAAGGGCCTGAAACAACACAATGTGTAGCATTTACCCGGATAGATTTCCCACCTTTGGCACGTGTGGTTCACGTTTCAGCTTCCTTTAATCATGCAGCCTTTGTTATGCAATCTGGAGAGGTATTCACGTGTGGGGATAATTCATCTTCTTGCTGTGGGCATAGGGATACAATCCGGCCAATTTTCAGGCCACGTCTTGTTGAATCCCTGAAGGGGATTCCTTGCAAGCAGGTTTCAGCAGGGCTCAACTTCACAGTCTTCCTCACTAGACAAGGTCATGTCTATACATGCGGAACCAACACACACGGCCAACTTGGTCATGGTGATACTCAGGACAGACCAACCCCCAAAATGATTGAAGTCCTTGGTAACGTTGGCTCTGTTGCTCAGGTTGCTGCTGGACCAAGCTATATCTTAGCTGTAACAGAAAATGGAGCCGTATATTCCTTTGGATCGGGTGCTAACTTCTGCCTTGGTCATGGTGAGCAACATGACGAGCTTCAGCCACGTGCAATACAGAAGTTTAGGAGGAAAGGAATTCATGTTGTGCGTGTGTCCGCCGGGGATGAGCATGCAGTGGCACTTGATTCGAATGGATTCGTATATACATGGGGCAAGGGATACTGTGGTGCTTTAGGCCATGGTGATGAAATTGAGAAGACAACTCCAGAGATCTTGACTAGTCTTAAGAATCACTTGGCTGTCCAGGTATGTGCAAGAAAGAGGAAAACTTTTGTGCTGGTTGATTCTGGTTCAGTCTATGGCTTTGGTTCCATGGGATTCGGTAGCCTCGGATTTCTGGATAGAAGGGTATCTGATAAAGTCTTGAAACCACGAGTCTTAGATACCTTAAGAGCTCACCATGTATCTCAGATTAGCACTGGCTTGTACCACACTGTGGTGATCACTAGCAGAGGACAGATATTTGGCTTTGGAGACAATGAAAGAGGACAACTTGGTCGTGACACACTAAGAGGGTGCCTTGAGCCAACTCAAATTTTCATAAAAGATACGTCTGAAGATGTAGATCCTGATTTAGAAAGCAGCATCTGA 1482 0.4568 MVDRFRPVSIEELPSHLILEVLCSGRLSALDLVCLELTSKTFGGGHFLSPLKFKSLVEFAAFQLCASHVIYSSMGLNSQKELYDRCGANWKRVLRFLQSVEQSSETVETSSGNMQITTGKYHTLLISNSSVYSCGSGLCGVLGQGPETTQCVAFTRIDFPPLARVVHVSASFNHAAFVMQSGEVFTCGDNSSSCCGHRDTIRPIFRPRLVESLKGIPCKQVSAGLNFTVFLTRQGHVYTCGTNTHGQLGHGDTQDRPTPKMIEVLGNVGSVAQVAAGPSYILAVTENGAVYSFGSGANFCLGHGEQHDELQPRAIQKFRRKGIHVVRVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIEKTTPEILTSLKNHLAVQVCARKRKTFVLVDSGSVYGFGSMGFGSLGFLDRRVSDKVLKPRVLDTLRAHHVSQISTGLYHTVVITSRGQIFGFGDNERGQLGRDTLRGCLEPTQIFIKDTSEDVDPDLESSI* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1018 493 Pfam Regulator of chromosome condensation (RCC1) repeat 235 283 IPR000408 -
Dod10g1018 493 Pfam Regulator of chromosome condensation (RCC1) repeat 287 338 IPR000408 -
Dod10g1018 493 Pfam Regulator of chromosome condensation (RCC1) repeat 181 231 IPR000408 -
Dod10g1018 493 Pfam Regulator of chromosome condensation (RCC1) repeat 341 382 IPR000408 -
Dod10g1018 493 PRINTS Chromosome condensation regulator RCC1 signature 435 451 IPR000408 -
Dod10g1018 493 PRINTS Chromosome condensation regulator RCC1 signature 289 305 IPR000408 -
Dod10g1018 493 PRINTS Chromosome condensation regulator RCC1 signature 451 465 IPR000408 -
Dod10g1018 493 PRINTS Chromosome condensation regulator RCC1 signature 325 338 IPR000408 -
Dod10g1018 493 PRINTS Chromosome condensation regulator RCC1 signature 344 360 IPR000408 -
Dod10g1018 493 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 394 448 IPR000408 -
Dod10g1018 493 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 478 - -
Dod10g1018 493 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 342 393 IPR000408 -
Dod10g1018 493 Pfam Regulator of chromosome condensation (RCC1) repeat 432 461 - -
Dod10g1018 493 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 328 338 IPR000408 -
Dod10g1018 493 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 435 445 IPR000408 -
Dod10g1018 493 Gene3D - 58 285 IPR009091 -
Dod10g1018 493 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 235 287 IPR000408 -
Dod10g1018 493 SUPERFAMILY RCC1/BLIP-II 123 478 IPR009091 -
Dod10g1018 493 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 234 IPR000408 -
Dod10g1018 493 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 288 341 IPR000408 -
Dod10g1018 493 Gene3D - 286 486 IPR009091 -
Dod10g1018 493 PANTHER BNAA01G28890D PROTEIN 9 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1018 Dod-Chr10 28212731 28217603 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1018 - - gmx:100782653 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1018 10 28212731 28217603 Dod10g1018 10 28212731 28217603 ECH