Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0994 ATGGACCCTGACGTCGTTGAAATTCCTCCCCCAATTCACCACCCTTCCAGATTCGTCAAGCAAAAACTGGATGTGATTGACATTGACAATGATGACGACTCGGATTTAATGATAATTGGTGAAAAAGTTGGTAAAAGTAACAAGGGGAAGACAATTGAAGCCATGCATGATGATTATGGCGATCTTCAAGAAATGTCTGATTATCCTGGTGTGGAGAAATTTGGACCAGATAGCGGGATTGAGACTTCTAATGGTTATCCTTCAGTATCACATAACTTAATCGGTGTTGATGGTCATGGTTCTGATATGTCATGTGATGATGATGATTATGTTGATCTTTTTTCAGAAGATTATGCAGATGTAGATGAGTATGCTTTATTACAGGCACACTTTGATAATATGGACATACCGCCTGGAGTCGAAGCACCTTTTACTTGGTTGCCAGAATATGACCTAGGTTTAAAGCAGACTGGAAATAGTTCATTGTATCCTTGGTGTCTTCCACAATCAGATGCTAAAAATTCTCACCTGACAGACTCATCTCAGCCTCCATGGTCAGTAGAGTTTAGTAACCCAAAAATCATAGGATCTTCTCTGGGTGGTTCTAATTTGCAAATCAAGATGGGTGAGATCAGTCACTCTTCTGGAATGGAATTGTCTTCTCAGTTAATTTCTCAAGCTGCTTCTAGTAAGAAGAAATCAGCAACTACGCATCGTAGAGGGCGTGATTTGAATACGTCATTAGGAGTCGAGTCATCTAAATCTCAGTGGCTTTCAGAACCTCTCCATAGTAAAAAGAAGCCTGCTATTTTTGGTGCTTCAACTAATCATGGTTTCATAGGCAATTCAGAGGCCATGAAGCTGCCACCTGCAGGTGAGCCACCATTTTGGGCGAAATTTAAAAGTGCCAAGAAGGCAGGTAGCAGTAGCAGTTTGTACCATTCAAATTTCATTGGACACGATGGATCATTCCATCCTCCAGGAATAGATTCAGAAAACCCGTGGTGGAAGAATTCTCAGAATTTTAAGCCATTTTTAACTAATTATACAGCTAATTCAACTGTTCATGATCCATTTGATTTTCCTCCTGCCCCTCCGGATTACGTGCATGATAACTTTTCAGTTAGCTATGCTGCCAGAGATGGAAACAACGGAGATAGTCCATCTGTAACAATCTCCAATGAATCCAGAGATGAAATCCTGAGGAAGTTTCAAAGTTTTAAACAATTTGACACTGTTGAAGATGCTTCAGATCATTACTTTATTGGCTATAATTCTTCCATGAAGCAGCATCCAAAGAATTGGGCTAAAAAAATCCAGGAAGAATGGAAGATTTTGGAGAAGGATTTGCCAGATTCAATATTTGTCCGAGTTTATGAATCGAGGATGGATCTTTTGAGGGCAGTGATTATTGGAGCAGAGGGGACTCCTTATCATGATGGTCTGTTCTTTTTCGATGTTTTCTTCCCTAGTGGCTATCCTAATGTGCCGCCGCATGTTCACTACCATTCCGGAGGTCTTCGGCTTAACCCAAATTTGTATAATTGTGGCAAAGTATGCCTTAGTCTACTCAACACCTGGTCTGGCAACAAGAATGAGAAGTGGCTTCCAGGTGTTTCAACAATTCTACAGGTTCTAGTCTCCATACAAGGTCTAATCTTGAATACAAAGCCTTACTTTAATGAACCTGGATATGCACATATGAGTGGCTCCGCAAATGGTGAAATGAGGTCCCTGCAGTATAATGAGGACACATTCATCCTATCATTGAGGACAATGATGTATATTATGAGAAGGCCTCCAAAGAATTTTGAGAGCTTCGTTATGGGGCATTTCTGCAGTCGAGCTCACGATATTCTAGTGGCATGTAAAGCTTACATGGAAGGTGCCCAAGTTGGGTGTTTGGTCAAAGGTGGAGTTCAGGATGTTGATGAGGGTGACAAAAGCTGCTCAAAGCAGTTCAAGGAGTCTCTAACTGGAGTTGTGAATATGCTTGTCAGAGAGTTGGCACAAATTGGAGCTCAGGACTGTGAGAAATTCTTGTCTCCAGGAACAACAATGAACAAGCCATTGGGTGGTTTGCCTGAGGCTGCCACTTGA 2100 0.4138 MDPDVVEIPPPIHHPSRFVKQKLDVIDIDNDDDSDLMIIGEKVGKSNKGKTIEAMHDDYGDLQEMSDYPGVEKFGPDSGIETSNGYPSVSHNLIGVDGHGSDMSCDDDDYVDLFSEDYADVDEYALLQAHFDNMDIPPGVEAPFTWLPEYDLGLKQTGNSSLYPWCLPQSDAKNSHLTDSSQPPWSVEFSNPKIIGSSLGGSNLQIKMGEISHSSGMELSSQLISQAASSKKKSATTHRRGRDLNTSLGVESSKSQWLSEPLHSKKKPAIFGASTNHGFIGNSEAMKLPPAGEPPFWAKFKSAKKAGSSSSLYHSNFIGHDGSFHPPGIDSENPWWKNSQNFKPFLTNYTANSTVHDPFDFPPAPPDYVHDNFSVSYAARDGNNGDSPSVTISNESRDEILRKFQSFKQFDTVEDASDHYFIGYNSSMKQHPKNWAKKIQEEWKILEKDLPDSIFVRVYESRMDLLRAVIIGAEGTPYHDGLFFFDVFFPSGYPNVPPHVHYHSGGLRLNPNLYNCGKVCLSLLNTWSGNKNEKWLPGVSTILQVLVSIQGLILNTKPYFNEPGYAHMSGSANGEMRSLQYNEDTFILSLRTMMYIMRRPPKNFESFVMGHFCSRAHDILVACKAYMEGAQVGCLVKGGVQDVDEGDKSCSKQFKESLTGVVNMLVRELAQIGAQDCEKFLSPGTTMNKPLGGLPEAAT* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0994 699 Pfam Ubiquitin-conjugating enzyme 439 563 IPR000608 -
Dod10g0994 699 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 434 594 IPR000608 -
Dod10g0994 699 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 23 683 - -
Dod10g0994 699 MobiDBLite consensus disorder prediction 223 250 - -
Dod10g0994 699 Gene3D Ubiquitin Conjugating Enzyme 393 675 IPR016135 -
Dod10g0994 699 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 23 683 - -
Dod10g0994 699 SUPERFAMILY UBC-like 424 601 IPR016135 -
Dod10g0994 699 CDD UBCc 437 563 IPR000608 -
Dod10g0994 699 SMART ubc_7 437 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0994 Dod-Chr10 27996090 28002148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0994 391 683 Miscellaneous Gene Families AT2G33770 49.153 8.26e-86 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0994 K10581 - gmx:100810772 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g0994 10 27996090 28002148 Dod10g0994 10 27996090 28002148 ECH