Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0966 ATGCCGTACAGAATCCGACCACTTTGCCGGTGGGAAAACAACCGATGGGCACTCAAAGCTCTCTTCAACACTGCCCACCCGACCACCAATCACCACTGCAGCCTCCTAACCCCAAACAACCTTAAACATCGTCGAACTCCTTCGACACACTCTTATCATCACTTACACTTCCTCGGACTCGTCGAAACCACACGGTCGCTGCATTCCGTTACGGACACACCACCACCCGTTTTCCTCCAGAGCCTCCTCAAGTTCCGGAGGGACAAGCCCGTCCACCAGGTTGAGCGAGCACTCGACCTCTGCGCGTTTGACATCGACGACGACCTCGTCCTTGACGTGCTGAAACGACACCTTTCCGATTGGGGGCCTGCGCTCGTGTTCTTCAACTGGGTCTCCAAGACAGGTCCCGCGCGTAACGGGTATCAGCCGAGTTCGCGCGTCTTCAACGAGATTATCGATATTCTCGGGAGAATGAAGCGGTTTCAGGAGCTGCACCAGGTGCTCGATGAAATGTCCAAGAGGGAGGAGGGTATCATCAACGAAGAGGTTTTCGGGACCTTGATTCGTAGGTATGCGAGTGCACATAAGGTGGAGGAAGCAGTTAGCATGTTCTATCGGAGGGAAGAGTTTGGCTTGAAGCTTGATTCGGAAGCATTTAGGACTCTTTTGATGTGGCTGTGTAGGTACAAGCATGTGGAAGATGCAGAAGCTTTGTTTCACAGTAAGGTGAATGAGTTTCCCCCAGATATAAAGTCATGGAACATCATTCTCCACGGTTGGTGCGTTTTGGGGAGCACGCATGAGGCAAAGAGGTTGTGGAAAGACATAGTGGCATCCAAGTGCAAGCCTGATCTTTTCACCTATGCAACGTTTATAAAGGCATTGACCAGGAAAGGGAAGCTAGGAACAGCACTAAGGTTGTTCCATGGCATGTGGGAAAAGGGTTGCAACCCTGATGCTGTGATATGCAACTGCATCATTGATGCTCTTTGTTTCAAGAAGAGGGTTCCTGAGGCATTAGAAGTTTTCCAGTGCATGAGGGAACGGGGTTGCGAACCCAATGTAGCTACTTACAATTCCTTGATTAAGCACATGTGTAAGATCCGGCGAATGGAGAAGGTCTATGAGCTGGTGGGTGACATGGAGAGGAGGAAGGGGAGTTGTTCACCTGATGTTGTTACTTACAGCTACTTGCTGAGGTCCTTGAAGGAGCCAGGGGAAGTTCCTGGGGTTGTGGAGAGGATGGAGAGAAATGGGTGCAGCATGAATGATGATGTTTACAACTTGGTTTTGAGGTTGTACATGGGATGGGATGATCAAGATGGAGTGAGAAGAACATGGGAAGAGATGGAAAGGAATGGATCCGGACCGGACAGGCGATCATACACAATCATGATTCATGGGCACCATGAAAATGGAAGAATGAAGGATACTTTGCGTTATTTTAGGGAGATGGTTTCTAAGGGAATGGTGCCTGAGCCTAGGACCGAGAAACTAATGGATTCCATGAACTTTGAAGTAGAGAACACGAATACAAGAAGGGTAGGATTGGGGAAACTAGTGTAG 1566 0.4936 MPYRIRPLCRWENNRWALKALFNTAHPTTNHHCSLLTPNNLKHRRTPSTHSYHHLHFLGLVETTRSLHSVTDTPPPVFLQSLLKFRRDKPVHQVERALDLCAFDIDDDLVLDVLKRHLSDWGPALVFFNWVSKTGPARNGYQPSSRVFNEIIDILGRMKRFQELHQVLDEMSKREEGIINEEVFGTLIRRYASAHKVEEAVSMFYRREEFGLKLDSEAFRTLLMWLCRYKHVEDAEALFHSKVNEFPPDIKSWNIILHGWCVLGSTHEAKRLWKDIVASKCKPDLFTYATFIKALTRKGKLGTALRLFHGMWEKGCNPDAVICNCIIDALCFKKRVPEALEVFQCMRERGCEPNVATYNSLIKHMCKIRRMEKVYELVGDMERRKGSCSPDVVTYSYLLRSLKEPGEVPGVVERMERNGCSMNDDVYNLVLRLYMGWDDQDGVRRTWEEMERNGSGPDRRSYTIMIHGHHENGRMKDTLRYFREMVSKGMVPEPRTEKLMDSMNFEVENTNTRRVGLGKLV* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0966 521 Pfam PPR repeat family 318 367 IPR002885 -
Dod10g0966 521 Pfam PPR repeat family 248 296 IPR002885 -
Dod10g0966 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Dod10g0966 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Dod10g0966 521 TIGRFAM PPR: pentatricopeptide repeat domain 286 320 IPR002885 -
Dod10g0966 521 TIGRFAM PPR: pentatricopeptide repeat domain 252 284 IPR002885 -
Dod10g0966 521 TIGRFAM PPR: pentatricopeptide repeat domain 357 391 IPR002885 -
Dod10g0966 521 TIGRFAM PPR: pentatricopeptide repeat domain 461 492 IPR002885 -
Dod10g0966 521 TIGRFAM PPR: pentatricopeptide repeat domain 321 355 IPR002885 -
Dod10g0966 521 TIGRFAM PPR: pentatricopeptide repeat domain 183 215 IPR002885 -
Dod10g0966 521 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 63 512 - -
Dod10g0966 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 384 IPR002885 -
Dod10g0966 521 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 63 512 - -
Dod10g0966 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Dod10g0966 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Dod10g0966 521 Gene3D Tetratricopeptide repeat domain 384 514 IPR011990 GO:0005515
Dod10g0966 521 Gene3D Tetratricopeptide repeat domain 242 383 IPR011990 GO:0005515
Dod10g0966 521 Gene3D Tetratricopeptide repeat domain 91 241 IPR011990 GO:0005515
Dod10g0966 521 Pfam Pentatricopeptide repeat domain 388 434 IPR002885 -
Dod10g0966 521 Pfam PPR repeat 183 206 IPR002885 -
Dod10g0966 521 Pfam PPR repeat 461 489 IPR002885 -
Dod10g0966 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0966 Dod-Chr10 27630285 27634229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0966 69 503 Glycosyltransferase AT1G05670 22.993 9.58e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0966 - - ahf:112769232 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g0966 10 27630285 27634229 Dod10g0966 10 27630285 27634229 ECH