Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0942 ATGAGGACCATTCCAAGAGCACCATGCTTCACTCTTGTTCTTTTCATTGTAGCAGCAGTTCATGTTGAATGCCGTTATCTTCACACTCAAACTAGTCCCTCCAATGAATTGGTTTCTGATGGAGGAGTTGCTGGTGTTCAACCTCAAAATCATACTTACCTACATCTCAAAGACCAAGAGGTTTATGAGTCTTATGAAGGGAAGTACTGTAAACAAATGTATGGCTTCTTGCCATGTTCTAACAACATTGTTGGCCACCTCTTCCTCATTTTGGTGTATGAGTACCTGTTATTCCATGGAGAATCATATTTGGCTGCTGGGGGTGAACAGATCTTCAAGATTCTTGGCCCTGGTGTTTTTGGTGCTAGTGCCTTTGACATTCTTGGTGCACTTCCTGAGTCCTTGATTCTTCTTGTGACTGGACTTTCCGGTGACAAGGAGAGTGCACAAGAGGATGCTTCCACTGGAGTTGGCTTGTTGGCTGGCTCATCCATCTTGCTTCTGACAGTAGTATGGGGAACCTGTGTCATCATTGGCAAGCAGAAGTTAAAAGAAGAATCTGAGTCTGATGCCACATATTCATCAAGTGGAAGGATAAGAGAGTCATTGACTGGATATGGAATAACTATGGATGTAGAGACTAGAAAGATGGCAAGAATCATGGTTTTCTCAATTATACCACTCATAATAATGCAGATTTCCAATTTGTTCCCGAACTCTCCTACACTACGCAATGTGAACCTGATGGTTTCTCTTACTGTGGCTGTCATTTTTCTCATCTCATACTTCATTTACCAGGTCTTTAGACCTCAGATAGAGAAAATAAGACTAGAATATATAAAACATGATGATTTGATACTAAGAATACTGCAAAGGGTTGAAAAGCAAACTCTGCAGAAGATCCTGGCCGAGGATGGGACTCCCAATGTAACTGCCATAAGCGGGCTATACCATGAAATCAGTCAACATGGGCCGGGCAAGGATTTATTAGCATCTGAAGTAAGAGAGCTACTGCTCAAGAACAAATTAACTGATACAAATATCAAAGAGGAACAAATAGCAGACATGTTGAAGATTTTTGACCGAAATGGTGACCAAATTATAACCAAGGAAGAATTTGTCTCTGGCTTAACGGAATATATTAACCAAACAAAGCATGCTCTGGACAGACAGTACCTCCCAAAAGAATCATTGAACAAAGTGTATCAGACTTTTATCAAGCCATGGATTGAACATGTGAGAAAAGAACGCGAATTAAAGGGACATGTTATATCTGAAGTGCTAAAGCATGTTCAGAAGAATGATGTGGTTGGAAGGCTGCTCAATGATGACGGCATGCCTGATACACCTGCTATCAGAAAGTTATTTGAGGAAATGGATAGCAATAAGGATAACCACGTTTCAAGATCTGAGCTAGAAAGAATAGTCAAGGACATCCACTTTAGTAAAGCTGTAGGAGCAGAGGATGCAGTTACAAAACTTGTTCAAGAACTTGATATCAACGGAGACAATGAAATCAGTGAGAAGGAATTTGTTGATGGTTTTACAAAAATGATAAAGTCAGATTCCTCAAAGTCTTCACATCATGGAATTCATCGAGTATTTTTTTTTTTTTGGCCACTATTCGTTTACTCAAACAACTTACACATTTTTCATCTAATTACACGATCAATAACATAA 1680 0.3952 MRTIPRAPCFTLVLFIVAAVHVECRYLHTQTSPSNELVSDGGVAGVQPQNHTYLHLKDQEVYESYEGKYCKQMYGFLPCSNNIVGHLFLILVYEYLLFHGESYLAAGGEQIFKILGPGVFGASAFDILGALPESLILLVTGLSGDKESAQEDASTGVGLLAGSSILLLTVVWGTCVIIGKQKLKEESESDATYSSSGRIRESLTGYGITMDVETRKMARIMVFSIIPLIIMQISNLFPNSPTLRNVNLMVSLTVAVIFLISYFIYQVFRPQIEKIRLEYIKHDDLILRILQRVEKQTLQKILAEDGTPNVTAISGLYHEISQHGPGKDLLASEVRELLLKNKLTDTNIKEEQIADMLKIFDRNGDQIITKEEFVSGLTEYINQTKHALDRQYLPKESLNKVYQTFIKPWIEHVRKERELKGHVISEVLKHVQKNDVVGRLLNDDGMPDTPAIRKLFEEMDSNKDNHVSRSELERIVKDIHFSKAVGAEDAVTKLVQELDINGDNEISEKEFVDGFTKMIKSDSSKSSHHGIHRVFFFFWPLFVYSNNLHIFHLITRSIT* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0942 559 SMART efh_1 490 518 IPR002048 GO:0005509
Dod10g0942 559 SMART efh_1 352 380 IPR002048 GO:0005509
Dod10g0942 559 SMART efh_1 451 479 IPR002048 GO:0005509
Dod10g0942 559 Pfam Sodium/calcium exchanger protein 102 268 IPR004837 GO:0016021|GO:0055085
Dod10g0942 559 CDD EFh 452 516 IPR002048 GO:0005509
Dod10g0942 559 ProSitePatterns EF-hand calcium-binding domain. 361 373 IPR018247 -
Dod10g0942 559 Pfam EF-hand domain pair 344 378 IPR002048 GO:0005509
Dod10g0942 559 ProSitePatterns EF-hand calcium-binding domain. 460 472 IPR018247 -
Dod10g0942 559 ProSiteProfiles EF-hand calcium-binding domain profile. 486 521 IPR002048 GO:0005509
Dod10g0942 559 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 401 522 - -
Dod10g0942 559 Pfam EF-hand domain pair 451 513 IPR002048 GO:0005509
Dod10g0942 559 Gene3D - 389 529 - -
Dod10g0942 559 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 9 394 - -
Dod10g0942 559 ProSiteProfiles EF-hand calcium-binding domain profile. 447 482 IPR002048 GO:0005509
Dod10g0942 559 Gene3D - 307 388 - -
Dod10g0942 559 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 401 522 - -
Dod10g0942 559 SUPERFAMILY EF-hand 344 522 IPR011992 -
Dod10g0942 559 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 9 394 - -
Dod10g0942 559 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
Dod10g0942 559 ProSiteProfiles EF-hand calcium-binding domain profile. 348 383 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0942 Dod-Chr10 27335077 27340417 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0942 401 519 EF-hand Containing Proteins AT1G53210 40.323 5.79e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0942 - - ahf:112771843 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g0942 10 27335077 27340417 Dod10g0942 10 27335077 27340417 ECH