Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0896 ATGTCACGCATCCCAGTTTCCACTACTTCACTCTTCTTCGCTCTCTGCTCTGCCTCTGCTCTCTCAGAAACAACACGCTTGCTTCTTCCTTCTTTTCCCCCCCTCTCTCTCTCTACAAGAACCACCACCACCACCACCACCACCTCGAACACCAGGAGAAGGGGTGGTCCTGTTGTTGTTCTTGGAATCAATCGAATAGAATCAATGGCGGGGTACAGGGCGGACGATGACTACGACTACCTGTTCAAGGTGGTGCTGATAGGGGACTCAGGGGTGGGGAAGTCGAACCTGCTGTCTCGGTTCACGAAGAACGAGTTCAACCTGGAGTCCAAGTCCACCATTGGGGTCGAGTTCGCCACCCGCACCCTCAACGTCGACTCCAAAGTCATCAAGGCCCAGATCTGGGACACCGCCGGTCAAGAGAGGTATCGCGCCATCACCAGTGCTTACTACCGTGGGGCAGTAGGCGCACTTCTTGTGTACGATGTCACTCGCCATGCAACATTCGAGAATGTTGACAGATGGCTGAAAGAATTGCGAAACCACACGGACGCCAACATCGTTGTGATGCTGGTAGGAAACAAATCAGATCTTCGCCACCTCGTAGCCGTATCAACTGAAGATGGGAAGTCATATGCTGAGAAAGAATCTCTATACTTCATGGAAACCTCAGCTCTTGAGGCGACCAATGTAGAGAATGCATTTGCTGAGGTTCTGACTCAAATCTACCACATTGTAAGCAAGAAAGCAGTGGAGGCTACTGAAAATGGAACTGCATCTGTACCAGCTAAAGGAGAGAAAATAGATCTCAAAAATGATGTGTCTGCCTTGAAGAGAGTTGGTTGCTGCTCAAGCTAA 858 0.5035 MSRIPVSTTSLFFALCSASALSETTRLLLPSFPPLSLSTRTTTTTTTTSNTRRRGGPVVVLGINRIESMAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRNHTDANIVVMLVGNKSDLRHLVAVSTEDGKSYAEKESLYFMETSALEATNVENAFAEVLTQIYHIVSKKAVEATENGTASVPAKGEKIDLKNDVSALKRVGCCSS* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0896 285 SMART ran_sub_2 87 277 - -
Dod10g0896 285 TIGRFAM small_GTP: small GTP-binding protein domain 80 238 IPR005225 GO:0005525
Dod10g0896 285 SMART rho_sub_3 84 241 IPR001806 GO:0003924|GO:0005525
Dod10g0896 285 ProSiteProfiles small GTPase Rho family profile. 75 254 - -
Dod10g0896 285 PANTHER DRAB5-RELATED 69 285 - -
Dod10g0896 285 PRINTS Transforming protein P21 ras signature 82 103 - -
Dod10g0896 285 PRINTS Transforming protein P21 ras signature 123 145 - -
Dod10g0896 285 PRINTS Transforming protein P21 ras signature 185 198 - -
Dod10g0896 285 PRINTS Transforming protein P21 ras signature 220 242 - -
Dod10g0896 285 PRINTS Transforming protein P21 ras signature 105 121 - -
Dod10g0896 285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 249 IPR027417 -
Dod10g0896 285 ProSiteProfiles small GTPase Ras family profile. 67 285 IPR001806 GO:0003924|GO:0005525
Dod10g0896 285 SMART ras_sub_4 79 245 - -
Dod10g0896 285 CDD Rab11_like 79 243 - -
Dod10g0896 285 ProSiteProfiles small GTPase Rab1 family profile. 77 283 - -
Dod10g0896 285 Pfam Ras family 83 243 IPR001806 GO:0003924|GO:0005525
Dod10g0896 285 PANTHER RAS-RELATED PROTEIN RABA1B 69 285 - -
Dod10g0896 285 SMART rab_sub_5 82 245 - -
Dod10g0896 285 Gene3D - 74 283 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0896 Dod-Chr10 26694240 26699264 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0896 K07904 - gmx:547654 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g0896 10 26694240 26699264 Dod10g0896 10 26694240 26699264 ECH