Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2543 ATGAATGAAATGGAGAACGACAAGACGATGCTCCAGGAATGGTTCGAGCGAGTTGACTTGGACAAGATTGGAAGCATAACAGCACCCCAACTGAAGACAGCCCTAGCTGTGGGCAACCTCGAATTTCCCCTTTCAGTTGTTCAGCAGATGATCAGGATGTACGATTTTGACAGGAATGGTACTATGAGCTTCGAAGAATTTGTTGCACTCAACAAGTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTCCTTGATGATGTTTCTGAGGCATTGGTAAAGATCGGCTTCATGCTGGATTCTCCTGCCTTTTACTCTGTCTGCGAGAGCTTTGATCAAAGTAAAAATGGGAGGTTTCGGCTGGATGACTTCATATCACTCTGTATATTCTTACAATCAGCTAGGAATCTGTTTAATTCATTTGATACTGCAAAACAAGGCAGAGTTACTCTTGATCTGAACCAGTTTATCTATTGTAGTGAGTACACACTGAGCAACCATACTAACTGCTGCCAATTGTAG 546 0.4249 MNEMENDKTMLQEWFERVDLDKIGSITAPQLKTALAVGNLEFPLSVVQQMIRMYDFDRNGTMSFEEFVALNKFLLKVQHAFSDLERGRGFLVLDDVSEALVKIGFMLDSPAFYSVCESFDQSKNGRFRLDDFISLCIFLQSARNLFNSFDTAKQGRVTLDLNQFIYCSEYTLSNHTNCCQL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2543 181 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Dod09g2543 181 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Dod09g2543 181 PANTHER PEFLIN 5 168 - -
Dod09g2543 181 SUPERFAMILY EF-hand 5 167 IPR011992 -
Dod09g2543 181 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Dod09g2543 181 Pfam EF hand 47 70 IPR002048 GO:0005509
Dod09g2543 181 Gene3D - 1 170 - -
Dod09g2543 181 PANTHER PEFLIN 5 168 - -
Dod09g2543 181 SMART efh_1 10 38 IPR002048 GO:0005509
Dod09g2543 181 SMART efh_1 46 74 IPR002048 GO:0005509
Dod09g2543 181 CDD EFh_PEF_ALG-2_like 11 171 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2543 11 135 EF-hand Containing Proteins AT5G12180 26.515 2.10e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2543 - - gmx:100792880 292.352