Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2539 ATGGAAGCGTTGGTGGTTCTTCCAGCTCCGCTTTGGAATCCACTCTTGCCGCGTCCAAAATGCAAATATGCCTTTCCCACCACCGCTGCAGGCACTGGCTTTGCCTTTGGAACACGAACCATACCCATCCCCTCTTTCAATCTCAATCTCAAATCCTTTCGTGCATTCACAATCGCAAGGACTGCATCAGCATCATCACAGGCACAGCCCCATCCGCAGCAGGTCGTGGGGAGCGAATACGATAATCCCGTGAGTGGGGATTCCATACGCCACAGATTTCTGACCTTCTATGCTTCCCGTGGCCACACGGTGCTTCCTAGTGCCTCTCTCATCCCGGATGACCCAACAGTTCTACTCACGATTGCAGGAATGCTTCAATTCAAGCCTATATTCCTAGGGATGGCTCCAAGGCAAGTACCTCGTGCAACAACTGCGCAAAGGTGCATACGTACTAATGATGTCGAGAATGTAGGCCACACAGCTCGACATCATACCTTTTTTGAGATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAGGAAGCTATTAAGTGGGCGTGGGAGCTTACAACCATAGAGTTTGGTTTGCCAGCAGACAGATTATGGGTTAGTGTTTATGAAGATGATGATGAGGCTTTTGAGCTTTGGTCTGATGAGGTGGGTATCCCAGTTGAGCGTATAAAGAGGTTGGGTGAAGAGGACAACTTCTGGACCAGTGGAGTGACAGGTCCCTGTGGTCCTTGCTCAGAAATTTATTATGATTTTCATCCTGAGAGGGGATACATAGATGCCGATCTTGGTGATGATACAAGGTTTATAGAGTTCTACAATCTAGTATTCATGCAATACAACAAAAAAGATGATGGCTCCCTTGAACCTCTGAAGCAGAAGAACATAGACACTGGGCTTGGACTAGAGCGTATGGCTCGCATCCTTCAAAAGGTTCCAAACAACTATGAAACTGACTTGATTTTCCCCATCATAGAGAAGGCCTCTAGATTAGCAAATGTTTCATATGGCACTGCTGATTATCAGACGAAGAGGAATCTGAAAGTTATAGGAGATCACATGCGTGCAATTGTATTTCTCATCTCTGATGGGGTTGTCCCATCAAATATTGGGAGAGGTTATGTGGTTCGGCGGCTTATCAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAGGGAGATGGTATGGGAGACCTTGAAGGAGCATTTTTACCAGCTGTTGCTGAGAAAGTATTGAAATTAAGCACCCACATTGATGCTGATGTGAAGAGTAGAGCATCCCGCATCCTTGAGGAGTTGAAGAGAGAAGAGCTTCGCTTTGTGCAGACTCTGGAGAGGGGAGAAAAGTTGCTTGAGGAGAAGCTTGCTGATGCTTTATCAAGTGCAGAAAAAAACGGAACGGTACCTTTCTTGGCCGGCGAAGATGTGTTTCTTTTGTATGATACTTATGGATACCCAATGGAAATAACAAAAGAAGTGGCTGAAGAACGTGGTGTGAGTGTTGATTTAGATAGTTTTGATGTAGAGATGGAGAAGCAAAGGCGCCAATCTCAAGCTGCACACAATACTGTCAAACTTGCCATGGGAAATGGGGCAACTATTGCAGACAATGTATCTGACACTGAATTTATAGGATATGACAAACTTTATGCTAAAGCAATAGTAGAAAGCTTAGTAGCAAATGGTGATCCAGCTGTACAAGCTAGTGAAGGGAGTAATGTGGAAATTTTGTTGAACAGGACTCCATTTTATGCTGAATCAGGGGGACAAATTGGAGATCACGGTTATATATATATTGCTGAGGGTGAAAATCAACCAAAAACTGTTGTGGAGATAATAGATGTCCAGAAGTCTTTAGGTAACATATTTGTTCACAAGGGTACTGTTCAAAAGGGAGTTGTAGAGGTTGGCAAAGAAGTTGAAGCACGAGTGGATGTAAAGCTGAGGCAAAGAGCTAAGGTTCATCATACTGCTACTCATTTATTACAAGCGGCACTTAAAAAAGTTATTGGTCAGGAGACCTCACAAGCTGGTTCTTTGGTGGCATTTGATCGTCTGAGGTTTGATTTCAACTTCCACCGATCACTTCTTGACAGTGAGCTTGCAGAAATTGAAGGGCTAATCAATGGATGGATTGAGGATGCAACGCATCTTCAAACCAAAGTGATGCCTCTTGCTGATGCAAAAAGAGCTGGAGCTATTGCGATGTTTGGAGAAAAATACGGAGAAGAGGTACGTGTTGTAGAGGTTCCTGGTGTATCAATGGAACTTTGTGGGGGAACGCATGTCAGTAATACTTCTGAAATTCGTGGTTTTAAGATAATCTCAGAGCAGGGTATTGCTTCTGGAATCAGGCGTGTAGAAGCTGTAGCCGGGGAAGCTTTCATTGAATATGTCAATGCCCGTGATTTTTATCTGAAACAGCTATGTTCGACTCTCAAAGTTAAACCTGAAGAAGTGACGACAAGGATAGAAAACCTTCTAGAGGAGTTACGGGTAGTAAGAAATGAAAATTCTGCTGTGCGTGCTAAAGCAGCAGTCTACAAAGCCTCAGTTGTTGCAAGCAAAGCATTGTTGGTGGGAAAATCAAAACAGTACAGGGTACTAGTTGAGTGCTTGGATGATGTTGATGCTGAGTCACTTAAAAGTGCCGCAGAATATTTAATGGAAACACTAACTGATCCTGCAGCAGTTGTACTGGGCTCATGTCCAGGTGAAGGGAAGGTTAGTCTGGTGGCTGCTTTTACTCCAGGGGTCGTTGATCAGGGAATTCAGGCAGGTAAGTTTATTGGACAGATAGCAAAATTATGTGGTGGCGGAGGCGGAGGAAGGCCCAGTTTTGCCCAGGCTGGTGGGAGGAAGCCTGAAAACTTGGCAAGTGCCCTCGAGAAGGCTCAGTCGGATCTTATAGCTGTTCTTTCTGAAAAAGGAAACTGA 2952 0.4448 MEALVVLPAPLWNPLLPRPKCKYAFPTTAAGTGFAFGTRTIPIPSFNLNLKSFRAFTIARTASASSQAQPHPQQVVGSEYDNPVSGDSIRHRFLTFYASRGHTVLPSASLIPDDPTVLLTIAGMLQFKPIFLGMAPRQVPRATTAQRCIRTNDVENVGHTARHHTFFEMLGNFSFGDYFKKEAIKWAWELTTIEFGLPADRLWVSVYEDDDEAFELWSDEVGIPVERIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYIDADLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIFPIIEKASRLANVSYGTADYQTKRNLKVIGDHMRAIVFLISDGVVPSNIGRGYVVRRLIRRVVRTGRLLGIKGDGMGDLEGAFLPAVAEKVLKLSTHIDADVKSRASRILEELKREELRFVQTLERGEKLLEEKLADALSSAEKNGTVPFLAGEDVFLLYDTYGYPMEITKEVAEERGVSVDLDSFDVEMEKQRRQSQAAHNTVKLAMGNGATIADNVSDTEFIGYDKLYAKAIVESLVANGDPAVQASEGSNVEILLNRTPFYAESGGQIGDHGYIYIAEGENQPKTVVEIIDVQKSLGNIFVHKGTVQKGVVEVGKEVEARVDVKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRSLLDSELAEIEGLINGWIEDATHLQTKVMPLADAKRAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVSNTSEIRGFKIISEQGIASGIRRVEAVAGEAFIEYVNARDFYLKQLCSTLKVKPEEVTTRIENLLEELRVVRNENSAVRAKAAVYKASVVASKALLVGKSKQYRVLVECLDDVDAESLKSAAEYLMETLTDPAAVVLGSCPGEGKVSLVAAFTPGVVDQGIQAGKFIGQIAKLCGGGGGGRPSFAQAGGRKPENLASALEKAQSDLIAVLSEKGN* 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2539 983 Coils Coil 829 849 - -
Dod09g2539 983 Gene3D - 866 974 - -
Dod09g2539 983 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 84 806 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Dod09g2539 983 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 85 971 - -
Dod09g2539 983 SUPERFAMILY ThrRS/AlaRS common domain 649 808 IPR018163 GO:0000166
Dod09g2539 983 Gene3D - 660 795 - -
Dod09g2539 983 SMART tRNA_SAD_4 750 793 IPR012947 GO:0004812|GO:0005524|GO:0043039
Dod09g2539 983 TIGRFAM alaS: alanine--tRNA ligase 89 957 IPR002318 GO:0000166|GO:0005737
Dod09g2539 983 Gene3D Bira Bifunctional Protein; Domain 2 84 317 IPR045864 -
Dod09g2539 983 Gene3D - 721 774 - -
Dod09g2539 983 SUPERFAMILY Translation proteins 545 649 IPR009000 -
Dod09g2539 983 CDD AlaRS_core 87 316 - -
Dod09g2539 983 Pfam DHHA1 domain 830 971 IPR003156 GO:0003676
Dod09g2539 983 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 750 793 IPR012947 GO:0004812|GO:0005524|GO:0043039
Dod09g2539 983 Gene3D - 797 857 - -
Dod09g2539 983 PRINTS Alanyl-tRNA synthetase signature 301 314 IPR002318 GO:0000166|GO:0005737
Dod09g2539 983 PRINTS Alanyl-tRNA synthetase signature 274 285 IPR002318 GO:0000166|GO:0005737
Dod09g2539 983 PRINTS Alanyl-tRNA synthetase signature 152 163 IPR002318 GO:0000166|GO:0005737
Dod09g2539 983 PRINTS Alanyl-tRNA synthetase signature 352 368 IPR002318 GO:0000166|GO:0005737
Dod09g2539 983 PRINTS Alanyl-tRNA synthetase signature 376 389 IPR002318 GO:0000166|GO:0005737
Dod09g2539 983 Hamap Alanine--tRNA ligase [alaS]. 85 978 IPR023033 GO:0004813
Dod09g2539 983 Hamap Probable alanine--tRNA ligase, chloroplastic. 76 980 IPR027522 GO:0009507
Dod09g2539 983 Gene3D - 536 649 - -
Dod09g2539 983 SUPERFAMILY Class II aaRS and biotin synthetases 86 320 IPR045864 -
Dod09g2539 983 Pfam tRNA synthetases class II (A) 89 651 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Dod09g2539 983 PANTHER ALANYL-TRNA SYNTHETASE 85 971 - -
Dod09g2539 983 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 321 529 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2539 Dod-Chr9 46436329 46442794 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2539 K01872 - gmx:100788288 1541.55