Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2532 ATGTCGTGTTTATTGCCACACTTCAAGTGCCTCCCCGACACCTTCCGAACCCATCCCTATGTTCTTCCTACCCATCTAACCAGAACCAGAGCGAACTTGTGTTTCCATCCACACTGTATTCTATCAACGGCAACAGCACCACCCGTCCTTAATTTGCAACAGTTTGCGTTATCCACTCTGGATGCTCATTCTGATCCACTCACTGCAACTGCAACCACTCCGTGGCCCTATACTGCTCCTGCTCCACCCGCTGAGGAGGTGAAGTTTGAAGCAACCCTATCCACCGAATCACTTACAAGTGAAGAGGCTGTAATAGCTGCTGCTGCTTCTGAAGCTGTTGCTCTTGCTAAAGCAGCTGTGAAGGTTGCAAAGGATGCAGCTCTGCTTGTAAAAAAGAAACCCCCGCCTGAGCCAGGGTATAGATCCCATGTATCTTCCAATTCTGATAATTTACTCCTCAAATGGGTTCAGCATATGGAAACAGAAGATGGTGTAGCAGGAGGATCCATGGGCACTGGAGCGGAAATAATGGAAAATGTTGACATAAGCCACAATGAGGAGGAGTCTGATGATGTGGAGCCTGCCGATGACGAACTTGAGCGTCTGCAGGAACAGCTTTCTGATAGTATAGCTGTAAGATCTAGGCGCCAAATAGAAAGAAAAGCTAGAAGAGTCAGAGCGGCAGAGAAGACTGCCACAAATATTGGGTTTTTTAAGTCTGGCTCCTCCAGCAGAAGAAAGCGTGTCCCTATGCAAGAAGTAGACTATTCGGATCCACTTCGTTACTTGAGAGCAACAACTAGCAGTACTAGGCTTCTTACATCAACTGAAGAAATTGAGCTGTCTGAAGGAATACAGGACCTACTAAAGCTTGAAAAGCTCAAAGAGGATCTTGCAGAAAGATGTGGTGGTCAGCCCACGCTTGGTCAATGGGCTGCTGTGGCTGGGGTAGACCAGAAGACCCTGAGGAAGCGTTTAAACCACGGCAAATTTTGCAAAGATAAAATGATTAAAAGCAATATACGACTTGTTATATCAATTGCAAAGAATTATCAAGGAGCTGGGATGAATCTGCAAGATCTCGTCCAGGAAGGATGCCGAGGCCTTGTAAGAGGTGCAGAGAAGTTTGATGCTTCCAAGGGTTTTAAGTTCTCTACATATGCTCACTGGTGGATTAAACAGGCTGTTCGGAAATCACTTTCTGATCAGTCAAGGACTATCCGCTTACCATTCCACATGGTTGAGGCAACTTACAGAGTGAAAGAGGCAAGGAAGCAATTTTTTAGTGAAAACGGAAGACAACCCAGTGATGAAGAAGTTGCTGCGGCAACTGGACTGTCAATGAAGAGGCTTAGTGCCGTACTTATGACCCCTAAAGCTCCAAGATCTCTAGAACAGAAGATTGGGATCAACCTGAATCTTAAACCTTCGGAAGTGATTGCTGATCCTGATGCTGGAACAGCTGAAGAACAGCTCATCAAACAATTCATGAAGGAGGACCTGGAAAAGGTTCTGGAAAGTCTCAATCCTAGAGAGAGGCAGGTCATAAGATGGAGATTTGGTATGGACGATGGAAGGATGAAGACCCTGCAAGAGATAGGTGAAATGATGGGTGTCAGTCGGGAGAGAATTAGGCAAATTGAGTCGTGTGCTTTTAGGAAACTTAAGAACAAGAAGAGAACCAAGCATTTCCAGCAGTATTTGGTTTCATAA 1713 0.4553 MSCLLPHFKCLPDTFRTHPYVLPTHLTRTRANLCFHPHCILSTATAPPVLNLQQFALSTLDAHSDPLTATATTPWPYTAPAPPAEEVKFEATLSTESLTSEEAVIAAAASEAVALAKAAVKVAKDAALLVKKKPPPEPGYRSHVSSNSDNLLLKWVQHMETEDGVAGGSMGTGAEIMENVDISHNEEESDDVEPADDELERLQEQLSDSIAVRSRRQIERKARRVRAAEKTATNIGFFKSGSSSRRKRVPMQEVDYSDPLRYLRATTSSTRLLTSTEEIELSEGIQDLLKLEKLKEDLAERCGGQPTLGQWAAVAGVDQKTLRKRLNHGKFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQFFSENGRQPSDEEVAAATGLSMKRLSAVLMTPKAPRSLEQKIGINLNLKPSEVIADPDAGTAEEQLIKQFMKEDLEKVLESLNPRERQVIRWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRTKHFQQYLVS* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2532 570 ProSitePatterns Sigma-70 factors family signature 2. 529 555 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod09g2532 570 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 404 455 IPR013324 -
Dod09g2532 570 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 26 569 - -
Dod09g2532 570 Pfam Sigma-70, region 4 504 556 IPR007630 GO:0003700|GO:0006352|GO:0006355
Dod09g2532 570 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 334 558 IPR014284 GO:0003700|GO:0006352|GO:0006355
Dod09g2532 570 Pfam Sigma-70 region 2 336 405 IPR007627 GO:0003700|GO:0006352|GO:0006355
Dod09g2532 570 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 26 569 - -
Dod09g2532 570 Gene3D - 490 570 IPR036388 -
Dod09g2532 570 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 472 566 IPR013324 -
Dod09g2532 570 Gene3D - 409 484 IPR036388 -
Dod09g2532 570 CDD Sigma70_r4 498 556 - -
Dod09g2532 570 PIRSF Sigma_factor_SigC 52 570 IPR016262 -
Dod09g2532 570 PRINTS Major sigma-70 factor signature 508 520 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod09g2532 570 PRINTS Major sigma-70 factor signature 544 555 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod09g2532 570 PRINTS Major sigma-70 factor signature 384 392 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod09g2532 570 PRINTS Major sigma-70 factor signature 360 373 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod09g2532 570 PRINTS Major sigma-70 factor signature 529 544 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod09g2532 570 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 257 406 IPR013325 GO:0003700|GO:0006352|GO:0006355
Dod09g2532 570 Coils Coil 185 205 - -
Dod09g2532 570 Pfam Sigma-70 region 3 415 491 IPR007624 GO:0003700|GO:0006352|GO:0006355
Dod09g2532 570 Gene3D RNA Polymerase Primary Sigma Factor 179 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2532 Dod-Chr9 46335762 46339789 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2532 - - aprc:113864822 794.653