Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1986 ATGGCGGAGGAGGCACAGTATTCATCGGGAACAGAGTCGACCCCGCTGAAGCGCAAGTACGATTACGACGACCACTCCCCCCCTCCCCGCCCCACCGGCTTCTCCGCTGCTCCCCCTCCCTCCTCCTACAACTCCGTACCTCCTCCCCCCGCCTCCGGCATCGAGCTCGCCAAGCAGCGCGCCCAGGAGGTCGCCGCCCGCCTCCTCAGCGGCGCCCCTCCTCCTCCCCTCGACCCCAAGCGCCCCAAGCTCGACAACACCAACAACAACAACGGTGCCCCTCCTTCTTCCTTCGATTCCCCCGATTTAGATTCGAAGCTTCAATACTCGGCTCCTTCAGCTGCTCCGGTCTCGTACGGGCATCAGGGCACAAGCAAGAAGGTTGATATACCGAATGGGAGGGTTGGTGTTATCATTGGTAAAGGAGGGGAGACTATCAAGTATCTTCAGTTGCAGTCTGGTGCCAAAATCCAAGTCACGCGTGACATGGACGCTGACCCTAATTCTGCCACTAGGATGGTTGAGCTCATGGGTACTCCTGAAGCTATTGCCGCCGCTGAGAAACTCATCAATGAAGTTCTTGCTGAGGCTGAGGCTGGTGGTTCTGGCATTGTTACCCGGCGAATCACAGGACAATCTGGGTCTGATGAATTTGTGATGAAAATCCCAAACAATAAGGTTGGACTTATAATTGGTAAAGGAGGAGAAACCATAAAGAATATGCAAGCTTCAACTGGAGCACGGATTCAGGTGATTCCTCTGCATCTTCCTCCCGGTGATACATCAGCTGAAAGAACATTAAAAATTGAAGGGACCCCTGATCAACTTGAGTCTGCAAAGCAGTTGGTTAATCAAGTCATCAGTGGTGAGAATCGTCTTAGAAATCCTTCTATGTCTGGCGGTTATTCTTCACAAGGTTACCAGGCTCGACCACCCTCCAGCTGGGCTCCCCCTGGTGCTCCTATGCCACAACCTGGTTATGGCTATGCGCAGCCTGGAGCTTATTCTGGTCCTTCACCACAATATAACGTGCCTCAAGCACCATACGCAGGCTATCCTCCCCAACAGGCTGGTGGATATTCCACTAATTGGGACCAGTCCACTGCACCACCTCATCAGCAGTCTGCCCATACCGGTGGTTATGATTACTATAGTCAACAGCCGCATCAACAGCAAAATCCTGGGGGTCCTACACCTCCGGCTGATGGGTCTACTTACAATTACAGTCAACCACCTCCCTCTGGTTATAATCAACCGGGACAGGGTTATGCTCAGGACAGCTATGGTGCATATAATGTGCCACCACAATCAGGGTATGGTCAGCCATCGGCATATGATCAGCAACAAGGCTATAGTTCAGCTCCCAGCTATGGTAGTGGGAGTAACCCAGCCCAAGAGGGCCATACTGCCAACTATGGATCGCAGGGGGATTCAGCCCAAGCACCACCTTCTCAACCCACTACAATGGCCCAGCAAGGTTATGCTACTAACCAACAGCCGAGCCCAAACACTTCCAACTATCCTCCTCAAGGAGCTCAGCCAGGTTATGGTATGCCCCCTACCTCCCAAGCAGCCTATGGTTATGGACCTGGTTATGGACCCCCACAAACTCAAAAGCCAGGTGGCACTCCACCTGTTTATGGACAGTCACAGTCACCTAGCACAGCAGGAGGCTATGGTCAGTCAGCATATCCACCTGCCCAGCCCCCTCCATCTGGGTATACTCAACCAGAATCAGGCCCTCAAAGAGCACCACCAGGCGGTGCAGTGCAAGCAGGGTATGGTCCTCAATCATATAGTGCTCCTCCAGGTGGTCAGCCTGGTTATGGGCAGGCACCACCATACAGCAATAGTTCCTATGGTACTGGTTATTCTCAGCCTCCAGTATATGCTAGTGATGGCACTGCTGGTGGAAATACTCGTGGAAGCTATGATGGAGCACCTGCGCAACAGGGTGGCGTTGCTAAAGCGTCACCTCAGAGTTGA 1986 0.5322 MAEEAQYSSGTESTPLKRKYDYDDHSPPPRPTGFSAAPPPSSYNSVPPPPASGIELAKQRAQEVAARLLSGAPPPPLDPKRPKLDNTNNNNGAPPSSFDSPDLDSKLQYSAPSAAPVSYGHQGTSKKVDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRMVELMGTPEAIAAAEKLINEVLAEAEAGGSGIVTRRITGQSGSDEFVMKIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDTSAERTLKIEGTPDQLESAKQLVNQVISGENRLRNPSMSGGYSSQGYQARPPSSWAPPGAPMPQPGYGYAQPGAYSGPSPQYNVPQAPYAGYPPQQAGGYSTNWDQSTAPPHQQSAHTGGYDYYSQQPHQQQNPGGPTPPADGSTYNYSQPPPSGYNQPGQGYAQDSYGAYNVPPQSGYGQPSAYDQQQGYSSAPSYGSGSNPAQEGHTANYGSQGDSAQAPPSQPTTMAQQGYATNQQPSPNTSNYPPQGAQPGYGMPPTSQAAYGYGPGYGPPQTQKPGGTPPVYGQSQSPSTAGGYGQSAYPPAQPPPSGYTQPESGPQRAPPGGAVQAGYGPQSYSAPPGGQPGYGQAPPYSNSSYGTGYSQPPVYASDGTAGGNTRGSYDGAPAQQGGVAKASPQS* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1986 661 MobiDBLite consensus disorder prediction 290 661 - -
Dod09g1986 661 ProSiteProfiles Type-1 KH domain profile. 123 190 - -
Dod09g1986 661 ProSiteProfiles Type-1 KH domain profile. 215 283 - -
Dod09g1986 661 MobiDBLite consensus disorder prediction 1 15 - -
Dod09g1986 661 MobiDBLite consensus disorder prediction 611 639 - -
Dod09g1986 661 MobiDBLite consensus disorder prediction 31 47 - -
Dod09g1986 661 CDD KH-I 217 283 - -
Dod09g1986 661 MobiDBLite consensus disorder prediction 542 561 - -
Dod09g1986 661 MobiDBLite consensus disorder prediction 356 511 - -
Dod09g1986 661 MobiDBLite consensus disorder prediction 290 311 - -
Dod09g1986 661 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 75 651 - -
Dod09g1986 661 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 125 201 IPR036612 GO:0003723
Dod09g1986 661 Gene3D K Homology domain, type 1 210 311 IPR036612 GO:0003723
Dod09g1986 661 Gene3D K Homology domain, type 1 118 209 IPR036612 GO:0003723
Dod09g1986 661 MobiDBLite consensus disorder prediction 1 127 - -
Dod09g1986 661 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 75 651 - -
Dod09g1986 661 MobiDBLite consensus disorder prediction 83 120 - -
Dod09g1986 661 CDD KH-I 125 190 - -
Dod09g1986 661 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 218 290 IPR036612 GO:0003723
Dod09g1986 661 Pfam KH domain 127 192 IPR004088 GO:0003723
Dod09g1986 661 Pfam KH domain 219 284 IPR004088 GO:0003723
Dod09g1986 661 SMART kh_6 214 288 IPR004087 GO:0003676
Dod09g1986 661 SMART kh_6 122 195 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1986 Dod-Chr9 41342007 41347643 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1986 K13210 - gmx:100813135 865.529