Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1940 ATGGCTCTGACATTTCGAAGAACCACAGCGAAAGCAACCCCTGCTTCTTCTTCTTGTTCCGCACCCCCAAATCCCAACCTTCCCGTTGTAGCTTCCATTACCTCTCTACTCCTTCAAACCCTAAACCCTCAAAACCCAAATGCCTCGTCAACCACCGTATCTGAACCCCTGAAACCATTCTCACGTCACCTCACACCAACCTTGGTGATCCAAGTCATCAAGAATCTGCACAACAACCCCAACCACGCCCTCTTCTTCTTCAATTGGGCCTCCAATCCACAACCCAATCCCTCCAACTACTCTCACACCCGCCACTGTTACGCCGCCATAGCCGACACCTTGCTCTCTCACTCCCTCTTCTCCACCGCCTACTCCCTCCTCCACCGCTGCAACAAGCTCTCCGACTCCCTCATCTGCAAATTCATCATCGCTTTGGGCCATCGTGGCGATATCAGGGGCGCCATTCACTGGTTCCACAAAGCCAAGGCCTTTTCAAAAGGGCGATGCTTGTTCTCCTGTAACGCGGTGTTGGGTGTTCTGGTGAGGGCTAATAGGGTCAATTTGGCCAAGGCTATCTACGACCACGTTGTGGAGGAGGGTGTGGTGGTGCCCGATGTGTTCACTTACACGACGATGATTAGGGGGTTCTGCAAAATGGGCTTGGTCGAGAGTGCCCTCAAGGTGTTCGATGAAATGCGGTGTGAGCCCAATTTGGTTACTTATAACACTTTGATTCATGGGTTTTGCAAGAAGGGTGACGTGGAGGGTGCCAAGAGGGTTTTTGATCGAATGGTGGAGGAAGGGAGTGAGAGTTGCAAGCCGGATGTGGTGACTTTTACTACTTTGATTGATGGCTATTCCAAGAGAGGTGAGTTCCGTGAGGCATTGGAGTGCATGGAGGAGATGGTGCAACAGGGTTGTCACCCCAATGTTTTGACTTACAATGTGTTGATTGAAGGTCTTTGTTTGAGTGGGAGTGTGGATGAGGCTAAGAAGATGATGACTAGGATGAGGTTGAATGGTTTGAAAGATGATGTTACCACAAACACTAGCATAACGAAGGGGTTTTGCATTGTCGGAAGGTCTGATGAAGCAATCAAGCATCTCAAGGAGATGATTAGTCGTGGGATGAGTCCTGATGTGAAGGCATACCATGTCATAGTTAATGAGTATTGCAAAATTGGAAAACCAAGTGAAGCGGTATTGCTTCTAAGGGAGATGGTGACCAGGGGCATTAAGCCCAGTGTTTCCGGTTTTAATGCAGTGTTTAGAGTTCTTGTGGATATGGGGGAGCTTGATGAAGCAGTTGGTCTTTTAAAGCGGATGCCACAAATGGGTTGCACGCCCAACTTCTTATCCTATAGCGTTGTGATATGTGGTCTTTGTGCAGTGAAGGGTAGGATGCAAGAAGTTGAAGAGCTCGTTTGTGAGATGATCCAGAATGGACATAACCTTGATACTGCCATGTATAACTGCTTGCTTGGGGGATATTGTGATCGCGGGGATGAAGAAAGGGCATTGAAAACGGCCTATGACATGATTGGCAAGAACTTTGTAATCAACAAAGACACTTTCTGCATTTTTGTCAAGGAGTTGTGTGGAAAGGGGAAACTGAAAGAGGCAGACACTGTGCTTGAAGAGATGTGTAGGAGATGCCCTGTACTGGATATGAATGCTTACAAATTGTTGCTTTGCCAGCTATGTAGGAAAGCTGAGGCAACGGAAGAACATTGA 1734 0.4792 MALTFRRTTAKATPASSSCSAPPNPNLPVVASITSLLLQTLNPQNPNASSTTVSEPLKPFSRHLTPTLVIQVIKNLHNNPNHALFFFNWASNPQPNPSNYSHTRHCYAAIADTLLSHSLFSTAYSLLHRCNKLSDSLICKFIIALGHRGDIRGAIHWFHKAKAFSKGRCLFSCNAVLGVLVRANRVNLAKAIYDHVVEEGVVVPDVFTYTTMIRGFCKMGLVESALKVFDEMRCEPNLVTYNTLIHGFCKKGDVEGAKRVFDRMVEEGSESCKPDVVTFTTLIDGYSKRGEFREALECMEEMVQQGCHPNVLTYNVLIEGLCLSGSVDEAKKMMTRMRLNGLKDDVTTNTSITKGFCIVGRSDEAIKHLKEMISRGMSPDVKAYHVIVNEYCKIGKPSEAVLLLREMVTRGIKPSVSGFNAVFRVLVDMGELDEAVGLLKRMPQMGCTPNFLSYSVVICGLCAVKGRMQEVEELVCEMIQNGHNLDTAMYNCLLGGYCDRGDEERALKTAYDMIGKNFVINKDTFCIFVKELCGKGKLKEADTVLEEMCRRCPVLDMNAYKLLLCQLCRKAEATEEH* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1940 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Dod09g1940 577 Pfam PPR repeat 202 233 IPR002885 -
Dod09g1940 577 Pfam PPR repeat 234 265 IPR002885 -
Dod09g1940 577 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 27 563 - -
Dod09g1940 577 MobiDBLite consensus disorder prediction 9 23 - -
Dod09g1940 577 Pfam PPR repeat 462 482 IPR002885 -
Dod09g1940 577 Pfam PPR repeat family 345 393 IPR002885 -
Dod09g1940 577 Pfam PPR repeat family 274 322 IPR002885 -
Dod09g1940 577 Pfam PPR repeat family 486 533 IPR002885 -
Dod09g1940 577 Gene3D Tetratricopeptide repeat domain 76 202 IPR011990 GO:0005515
Dod09g1940 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Dod09g1940 577 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 27 563 - -
Dod09g1940 577 TIGRFAM PPR: pentatricopeptide repeat domain 383 416 IPR002885 -
Dod09g1940 577 TIGRFAM PPR: pentatricopeptide repeat domain 207 235 IPR002885 -
Dod09g1940 577 TIGRFAM PPR: pentatricopeptide repeat domain 350 381 IPR002885 -
Dod09g1940 577 TIGRFAM PPR: pentatricopeptide repeat domain 313 342 IPR002885 -
Dod09g1940 577 TIGRFAM PPR: pentatricopeptide repeat domain 171 205 IPR002885 -
Dod09g1940 577 TIGRFAM PPR: pentatricopeptide repeat domain 419 450 IPR002885 -
Dod09g1940 577 TIGRFAM PPR: pentatricopeptide repeat domain 239 269 IPR002885 -
Dod09g1940 577 TIGRFAM PPR: pentatricopeptide repeat domain 277 311 IPR002885 -
Dod09g1940 577 TIGRFAM PPR: pentatricopeptide repeat domain 489 521 IPR002885 -
Dod09g1940 577 SUPERFAMILY HCP-like 147 377 - -
Dod09g1940 577 MobiDBLite consensus disorder prediction 1 23 - -
Dod09g1940 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 235 IPR002885 -
Dod09g1940 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Dod09g1940 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 520 IPR002885 -
Dod09g1940 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Dod09g1940 577 Pfam Pentatricopeptide repeat domain 403 458 IPR002885 -
Dod09g1940 577 Gene3D Tetratricopeptide repeat domain 338 410 IPR011990 GO:0005515
Dod09g1940 577 Gene3D Tetratricopeptide repeat domain 268 337 IPR011990 GO:0005515
Dod09g1940 577 Gene3D Tetratricopeptide repeat domain 427 577 IPR011990 GO:0005515
Dod09g1940 577 Gene3D Tetratricopeptide repeat domain 203 267 IPR011990 GO:0005515
Dod09g1940 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Dod09g1940 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 485 IPR002885 -
Dod09g1940 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1940 Dod-Chr9 40957526 40960220 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1940 204 575 Glycosyltransferase AT1G05670 30.933 2.36e-55 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1940 - - aprc:113866240 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1940 09 40957526 40960220 Dod09g1940 09 40957526 40960220 ECH