Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1908 ATGAGCTCCGTGTTCGAAGATGTAGATGAGTTCCAGGTCCCTCTCACGCAGACCACACTTTCCCATTCCAATCACCGCCCATCCAAGAAACCCAAACACAAAACGACACCTCACGTCATCATCGCCAAGGAGAACCTCCCTCCTAATCCTCCTCACGAAATCGACGGTTATAACTGCACCAGCTTGGATTGCATCCCTTCCACCATAGATTGCACCACCGCTCAACTACACTCCCAACAAAGCCACGACGACGACGACGTCGTTTCGCTGAAAACGAAGGGTGCGTACTTCCGCAACTCGATAGAGTCTAAGCTCGTGGTGTTGGGAACTCAGGCGCCTACAAAGGGATCTGGAAAATCGTTGAGCGATGAGGACGATGATGATGATTCGGAGCTCGATCTGTTGCTGAATCTGTGCAATGAGATGGACGAAGCTGATGGCTCCGCGGTGCTGCCACGTGTCGATGGCAATGGAGGTTCTGTTCGTTGTCCACTGTGTGGTGTCGACATTTCAAACCTGAGCGAGGAACAGCGACACCTTCATACCAATGATTGTCTCGATAGTGTAGAAGCTCAAGCTCAAGATTTTGTTCCTCCTGATGACGAGGCTGAGACGGGTGCTCAATTCGCGCCGAAAGGGAAAGTTGGGAATGTTTCTGCAGTTGTTGATTGGCTGCGCAATCTCGGGTTAGAGAAATACGAGGATGTTTTTGTGAGGGAAGAAGTTGATTGGGACACCTTGCAGTGGCTGGCAGAAGAGGATCTATTGAGCATTGGTATAACTGCACTTGGCCCCAGAAAAAAGATTGTACATGCCCTTTGTGAACTTAGAAAAGAGGTTGACCCTTCAGACGAGAAACATGAAGATGCTCCTGGAAAGCCTAGAAGGATACGAAACCAGAGAGTTAAATTGCAACGTGACAAATCTGAAAGAAAAGTTGATGGCACTAGTAAACCAGTGGCAAACAAGTTGATTACTGAATATTTTCCTGGCTTTGCTGTCAATGGGAAGAAAGCATCTGCTGCTGCCACTCCTGGAGAACAGCATGAAATAAAAAACACTATCATGGATTCTGGCCGTCAGACCAAAGCAAAAAATATGCCAACCAAAAGAAAACTTCGTGATGTTCCTAAATGGTGTAGCATACCGGGGACGCCTTTCCGGGTGGATGCTTTCAAGTATCTCAGAGGGGATTGTTCTCACTGGTTTCTTACACACTTCCATTTAGACCATTATCAAGGTCTCACCAAGTCGTTCAGTCACGGGAAGATCTATTGCTCCTCTGTTACTGCTAGGCTTGTAAATATGAACATTGGGATTCCCTATGATAAATTACATGTTTTGCCTCTAAACGAAAAGGTTTCAATAGCTGGTATTGATGTGACTTGCTTGGATGCCAATCATTGTCCGGGTTCCATAATCATACTCTTTCAACCTCCGAATGGTAAGGCGGTGTTCCACACTGGGGATTTTCGCTTTAGTGAAGAAATGGCAAACAATCCCTTCCTCCGGATGTGTCCTATCCATACTCTAATTCTTGATACAACATATTGTAACCCACAGTATGACTTTCCAAAGCAGGAGGCTGTCATACAATTTGTTATTGATGCCATTCAAGCGGAGGCTTTTAATCCTCAGACCCTTTTCCTGATTGGCAGCTATACTATTGGAAAGGAAAGGCTATTCCTGGAGGTTGCTCGTACACTTCGTAAGAAGGTTTACGTGACTGCAGCAAAGTTGCGTCTTCTGAAATGTTTGGAATTTCAGGAGGAGGATATGCAGTGGTTTACTTTAAATGAACACGAAAGCAACATTCACGTTGCGCCTATGTGGACACTCGCAAGCTTCAAAAGATTGAAACACATATCAAGTCAATATGCGGGTCGGTTCAGTCTCATAGTCGCTTTCTCTCCCACTGGTTGGACTTTTGGCAAAGGTAAAAAGAAGTCTCCTGGGAGAAGGTGGCAGCAGGGTACTATTATAAGGTATGAAGTGCCATATAGTGAGCATTGCAGCTTTGGAGAACTTAAAGAGTTTGTGAAACTTATGTCCCCTGATAACATTATACCTAGTGTGAATAATGACGGACCACAGTCTGCCAATGCCATGATTTCTCTCATGTTATCTTGA 2130 0.454 MSSVFEDVDEFQVPLTQTTLSHSNHRPSKKPKHKTTPHVIIAKENLPPNPPHEIDGYNCTSLDCIPSTIDCTTAQLHSQQSHDDDDVVSLKTKGAYFRNSIESKLVVLGTQAPTKGSGKSLSDEDDDDDSELDLLLNLCNEMDEADGSAVLPRVDGNGGSVRCPLCGVDISNLSEEQRHLHTNDCLDSVEAQAQDFVPPDDEAETGAQFAPKGKVGNVSAVVDWLRNLGLEKYEDVFVREEVDWDTLQWLAEEDLLSIGITALGPRKKIVHALCELRKEVDPSDEKHEDAPGKPRRIRNQRVKLQRDKSERKVDGTSKPVANKLITEYFPGFAVNGKKASAAATPGEQHEIKNTIMDSGRQTKAKNMPTKRKLRDVPKWCSIPGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFSHGKIYCSSVTARLVNMNIGIPYDKLHVLPLNEKVSIAGIDVTCLDANHCPGSIIILFQPPNGKAVFHTGDFRFSEEMANNPFLRMCPIHTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPQTLFLIGSYTIGKERLFLEVARTLRKKVYVTAAKLRLLKCLEFQEEDMQWFTLNEHESNIHVAPMWTLASFKRLKHISSQYAGRFSLIVAFSPTGWTFGKGKKKSPGRRWQQGTIIRYEVPYSEHCSFGELKEFVKLMSPDNIIPSVNNDGPQSANAMISLMLS* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1908 709 CDD SNM1A-1C-like_MBL-fold 365 520 - -
Dod09g1908 709 Pfam SAM domain (Sterile alpha motif) 217 275 IPR001660 GO:0005515
Dod09g1908 709 SUPERFAMILY Metallo-hydrolase/oxidoreductase 386 691 IPR036866 -
Dod09g1908 709 Gene3D - 523 670 - -
Dod09g1908 709 CDD SAM_superfamily 221 273 - -
Dod09g1908 709 MobiDBLite consensus disorder prediction 16 35 - -
Dod09g1908 709 Gene3D - 214 289 IPR013761 -
Dod09g1908 709 ProSiteProfiles SAM domain profile. 216 279 IPR001660 GO:0005515
Dod09g1908 709 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 161 706 - -
Dod09g1908 709 Gene3D - 382 692 IPR036866 -
Dod09g1908 709 Pfam Beta-lactamase superfamily domain 403 522 IPR001279 -
Dod09g1908 709 Pfam DNA repair metallo-beta-lactamase 591 695 IPR011084 -
Dod09g1908 709 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 161 706 - -
Dod09g1908 709 SMART SAM_4 213 279 IPR001660 GO:0005515
Dod09g1908 709 SUPERFAMILY SAM/Pointed domain 217 279 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1908 Dod-Chr9 40655807 40660973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1908 204 273 Glycosyltransferase AT3G07170 41.429 2.05e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1908 K15340 - gmx:100816321 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1908 09 40655807 40660973 Dod09g1908 09 40655807 40660973 ECH