Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1865 ATGGGTCACATTGGTTCCAGTAAGGACGCCAAGTATTCCAACAACGTTAACGTCGACGCTATGGACGTCGACGACGATCACTTCGATGACGACGACGATTTCCCTTCCAACGGCGTCCTCAGGGGCTTAGGCGAAGAGCCTCTGAGGAATTTCTGCAAGAAAGCTTCGATGCTGTTCTTCGATGAGTACGGTCTCATCAGCCACCAGATCAATTCCTTCAACCAGTTCCTCAGCACCGGTCTTCAGAGCGCGTTCGATTCCTTCGGCGATCTCATCGTTGAGCCTGGTTACGATCCTTCGAAGAAGGGGGAAGGGGATTACCGTTACGCCTCCGTGAAGTTCGGGAAGGTGACGCTGGACCAGCCTACGTTCTGGGGCGGCGAAGGGAACTCGAAGGAGTTCAAGATGCTTCCCAGGCACGCGCGGTTGCAGAGGATGACTTACTCTTCGAAAATGATAGTCAACGTTCAAGTTCAGGTTTATGTGCCGAGGATGGTGACAAGTGACAAATTTAAGACTGGGAAATCACAGTATCTTGATAGAGACATTATTAAGGAAGATAACAGAGAGATTCCAGTTGGGAGAATGCCTATCATGGTCAAGTCTGATCTTTGCTGGATGAAAGGGGTTGAAAAAGGTGATTGCGAGTTTGATCATGGAGGCTACTTTCTTATCAAGGGTGCGGAGAAGACTTTTATTGCTCAGGAGCATATCTATTTAAAGAGGCTCTGGATTATAGATAATCCTTGGTGGTCAATTTCCTACAAGTCACAGGTGAAGAGACACAGGCTGATTGTTAAACTGGTTGGGAATTCCAGAATTGAAGAAATTAACAGTGGAGAGAAGGTCCTCACCGTCTACTTCTTGGGGGTTGAGATTCCCATATGGGTGCTATTTTTTGGTCTTGGGGTGTCATCTGACAGAGAGGTGGTGGAGCTGATTGATTATAATGACGGTGATGCAAGAGTTGAGAATATTATTTCCGCATCTATCCATGACGCCGATGAGAAATATGACAGATTTCGTCAGGGGAAGAATGCACTTCAGCTCATTGAAAAGTCTATTAAAGGTGTCCAATTTCCACCTCCGGAACCTGTTGAAGATTGCCTAAATATGTACGTCTTTCCCAACATCAGAGGCTTCAAGAGAAAGGCACGCTTCCTCGCTTACATGGTGAAGGGTCTATTGATGGCTTATACTGGCAGAAGAAAGTGTGATAACAGGGATGACTTCCGGAACAAGAGGCTCGAGTTGGCTGCTGAGCTCTTGGAGCGTGAACTGAAGGTTCACATCGCTCATGCCCGGAAGAGACTCTCAAAGGCATTGCAAAGAGACCTCTATGGGGATCGGGAAGTGCGTCCTATTGAGCACTATCTGGATGCCTCCATAATCACAAATGGTCTCCAGAGAGCTTTCTCAACTGGAGCATGGTGTCATCCCTACAAGAGGTTGGAAAGGATTTCTGGTGTGGTCGGAAATGTTGGTCGAACCAATCCATTACAGACCCTGGCTGAGCTGAGAAGAACAAGACAGCAGGTTCAGTACACGGGCAAGGTCGGGGATGCTAGATACCCGCATCCTTCTCACTGGGGCAAAGTTTGTTTCCTCTCTACCCCAGATGGTGAAAATTGTGGTCTTGTGAAAAACTTGGCTGTCACAGGACTGGTGAGCACCAACATATCGGAACCTATACTGCCTCAGTTGTTTGATTGTGGAATGGAAGAGCTACTGGATGATACTTCTACCGATTTGGGAGAAAAGGACAAGGTCTTCCTGAATGGGGATTGGGTTGGTGTGTGCACAAATTCCATTTCATTTGTGCAAGAGCTAAGAAGTAAACGACGTAGAAATGAATTGCCCCCTCAGGTGGAAGTCAAGCGAGATAAATCTCTTAAAGAAGTGCGCATATACACTGATGCAGGAAGGATTCTGCGTCCTCTTCTGGTAGTTGATAATCTTCACAAGATAAAAGAGTCTAAAGGGTCTAAATGGGAGAATTACTCTTTCCGTTCTCTTTTGGAGAATGGAGTGATTGAACTTGTTGGGCCTGAAGAAGAGGAAGACTGCCGCACTGCTTGGGGTGTTCGTTATTTATTTGGAAAAAAAGTCAAGTACACCCACTGTGAACTTGACATGTCATTCCTATTGGGTCTAAGCTGTTCACTTATACCATTTGCTAACCATGATCATGCGAGGAGGGTGCTCTACCAGTCTCAGAAGCACTCCTCACAGGCCATTGGCTTTGGTACAACAAATCCGAACATTAGAGTTGATACTTTGTCGCACCAGTTATACTATCCCCAAAAACCTCTTTTCCGTACTATGACTTCTGATTGTCTTGGAAAAAAAGGATATCCACTCGGTCATAATAGTATAAATCCAAGGGCTGAATTCTATAATGGGCATACAGCAATTGTGGCTGTTAATGTACATATGGGATACAATCAAGAGGATTCCTTGGTGATGAACCGTGCTTCTTTGCAGCGTGGTATGTTCAGATCTGAGCACGTAAGAAGTTACAAAGCTGAAATTGATAATAAAGAATCTTCAGAGAAGAAGCGGAAACCTGAAGACATTGTAAATTTTGGGAAGATACAAAGTAAAATTGGTAGAGTTGATAGCCTCGATGATGATGGATTTCCATATATCAGTGCAAATTTGCAAAGTGGTGACATTGTTATTGGGCGTTGTGCTGAGTCAGGGACAGACCATAGTATAAAGTTGAAGCACACTGAAAGGGGGTATGTTCAGAAGGTCGTGCTGTCATCAAATGATGAAGGGAAGAATTTTGCTGTGGTTTCGCTGAGACAGGTTCGAAGTCCTGTTCTTGGAGACAAGTTTTCAAGCATGCATGGTCAAAAGGGTGTCTTGGGATTTCTGGAGTGTCAGGAAAATTTTCCTTTCACTAGACAAGGTATTGTTCCTGATATTGTCATTAATCCACATGCATTTCCCTCGCGACAAACTCCTGGGCAGCTCCTTGAGGCTGCTTTGGGAAAGGGGATTGCTCTTGGTGGTTCATTGATGCATGCGACCCCGTTCTCCACTCCCTCTGTTGATGCCATTACAGACCAGCTTCACAGAGCTGGGTTTTCAAGATGCGGATATGAGAGAGTATACAATGGGAGAACTGGTGAGATGGTTCGTTCACTCATATTTATGGGTCCAACATTCTACCAGCGACTACACCACATGTCCGAGGACAAAGTAAAATTCCGGAACACTGGTCCTGTTCACCCGCTGACTCGACAGCCTGTAGCAGACAGGAAGCGATTTGGAGGTGTTAAGTTTGGTGAAATGGAGCGAGACTGCCTCATTGCTCATGGTGCATCAGCCAACCTGTATGAACGTCTCTTCACACTCAGTGACTGCTCTCAGATACACATTTGTAGCAAATGCAAAAATGTTGCAAACGTGATCTTACGACCAGTGTCTGGTGGCCGGAAAATAAGAGGCCCTTACTGCCGTATCTGTGAATCTGTTGATGACATTGTAGTGGCCAATGTCCCATATGGAGCCAAATTACTGTGCCAAGAGCTTTTTAGCATGGGCATTAGTCTGAAATTTGAAACACAGCCCTGCTAG 3585 0.4558 MGHIGSSKDAKYSNNVNVDAMDVDDDHFDDDDDFPSNGVLRGLGEEPLRNFCKKASMLFFDEYGLISHQINSFNQFLSTGLQSAFDSFGDLIVEPGYDPSKKGEGDYRYASVKFGKVTLDQPTFWGGEGNSKEFKMLPRHARLQRMTYSSKMIVNVQVQVYVPRMVTSDKFKTGKSQYLDRDIIKEDNREIPVGRMPIMVKSDLCWMKGVEKGDCEFDHGGYFLIKGAEKTFIAQEHIYLKRLWIIDNPWWSISYKSQVKRHRLIVKLVGNSRIEEINSGEKVLTVYFLGVEIPIWVLFFGLGVSSDREVVELIDYNDGDARVENIISASIHDADEKYDRFRQGKNALQLIEKSIKGVQFPPPEPVEDCLNMYVFPNIRGFKRKARFLAYMVKGLLMAYTGRRKCDNRDDFRNKRLELAAELLERELKVHIAHARKRLSKALQRDLYGDREVRPIEHYLDASIITNGLQRAFSTGAWCHPYKRLERISGVVGNVGRTNPLQTLAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTNISEPILPQLFDCGMEELLDDTSTDLGEKDKVFLNGDWVGVCTNSISFVQELRSKRRRNELPPQVEVKRDKSLKEVRIYTDAGRILRPLLVVDNLHKIKESKGSKWENYSFRSLLENGVIELVGPEEEEDCRTAWGVRYLFGKKVKYTHCELDMSFLLGLSCSLIPFANHDHARRVLYQSQKHSSQAIGFGTTNPNIRVDTLSHQLYYPQKPLFRTMTSDCLGKKGYPLGHNSINPRAEFYNGHTAIVAVNVHMGYNQEDSLVMNRASLQRGMFRSEHVRSYKAEIDNKESSEKKRKPEDIVNFGKIQSKIGRVDSLDDDGFPYISANLQSGDIVIGRCAESGTDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLECQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGSLMHATPFSTPSVDAITDQLHRAGFSRCGYERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLIAHGASANLYERLFTLSDCSQIHICSKCKNVANVILRPVSGGRKIRGPYCRICESVDDIVVANVPYGAKLLCQELFSMGISLKFETQPC* 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1865 1194 Gene3D - 721 1077 IPR037033 GO:0003677|GO:0003899|GO:0006351
Dod09g1865 1194 Gene3D - 406 635 - -
Dod09g1865 1194 Gene3D - 58 239 - -
Dod09g1865 1194 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 36 1191 IPR015712 GO:0003899|GO:0006351|GO:0032549
Dod09g1865 1194 CDD RNA_pol_B_RPB2 65 1190 IPR015712 GO:0003899|GO:0006351|GO:0032549
Dod09g1865 1194 Pfam RNA polymerase beta subunit 64 454 IPR007644 GO:0003677|GO:0003899|GO:0006351
Dod09g1865 1194 Gene3D RNA polymerase alpha subunit dimerisation domain 1078 1192 - -
Dod09g1865 1194 Gene3D RNA polymerase Rpb2, domain 2 250 405 IPR037034 GO:0003677|GO:0003899|GO:0006351
Dod09g1865 1194 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 51 1191 - -
Dod09g1865 1194 ProSitePatterns RNA polymerases beta chain signature. 944 956 IPR007121 GO:0003677|GO:0003899|GO:0006351
Dod09g1865 1194 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 36 1191 - -
Dod09g1865 1194 Gene3D - 751 940 IPR014724 GO:0003899
Dod09g1865 1194 Coils Coil 413 433 - -
Dod09g1865 1194 Pfam RNA polymerase Rpb2, domain 6 720 1091 IPR007120 GO:0003677|GO:0003899|GO:0006351
Dod09g1865 1194 Pfam RNA polymerase Rpb2, domain 2 284 417 IPR007642 GO:0003677|GO:0003899|GO:0006351
Dod09g1865 1194 Pfam RNA polymerase Rpb2, domain 7 1093 1191 IPR007641 GO:0003677|GO:0003899|GO:0006351
Dod09g1865 1194 Pfam RNA polymerase Rpb2, domain 3 496 553 IPR007645 GO:0003677|GO:0003899|GO:0006351
Dod09g1865 1194 Pfam RNA polymerase Rpb2, domain 4 590 651 IPR007646 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1865 Dod-Chr9 40292914 40298821 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1865 - K16252 gmx:100815934 1954.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1865 09 40292914 40298821 Dod09g1865 09 40292914 40298821 ECH