Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1857 ATGGCAACCAGAAGAACCAAACCCCTTCTCTCCGCCGCCGTTGCCGCCGCCAGGACCTCTCGCAACCACAACCCACTCTCTTCTTCTCGCTCCGCACCCGCCTTCGCCCATGCCCATGCTTCGGAGACTACTAGAACAACAAATCCCCTTTGTCGGCCTGGTACCGCCGACACCAGCAATGTCGCCTCCGCCAAGGTCATGTCCCTCTCTTTCACTCGCACCTTCCACGCCTCTCCTCCCTCCTTCCGCTCCGCCGCTAGTTCTCAGATAACTCAGACAGAGTTCACTGATATGGCGTGGGAGGGGGTTATTGGTGCTGTTGATGCAGCACGAGTTAGTAAACAGCAGGTGGTGGAAACTGAGCACTTAATGAAAGCCCTCTTGGAGCAAAAGGATGGTTTGGCTCGAAGGATTTTCACTAAGGCTGGATTGGACAACACCTCGGTTCTGCAGGCTACTGATGGCTTCATAGCTCAGCAACCCAAGATTACCGGGGACACGACTGGCCCTGTGGTTGGTTCGCATCTTGGCTCCCTCTTGGACAATGCTCGAAAGTACAAGAAAGAAATGGGCGATGAGTATGTATCTGTGGAGCACTTTTTGCTGGCGTTTTGCTCGGATAAGAGATTCGGCCAACAGTTGTTCAAGAATCTTCAGCTTAGTGAGAAGGCTTTGAAGGATGCAGTACAAGCTGTTCGTGGAAGTCAAAGAGTGACTGATCCAAAAATAAACTTGAAACCAAAATTTGGCATTAAGTCTAAGAATATAATAAACTTTGATGGAATGGCAACAAAAAGGATAATGATTATTTCTGATTCTGATAGGCTACAATTAGCTCAACGTATAGTGCGTGGAGATGTTCCAGAACCATTGATGAACCGGAAGTTGATCTCCCTCGATATGGGTTCATTGCTTGCTGGTGCCAAGTTTCGTGGAGATTTTGAAGAAAGGTTGAAAGCTGTCCTTAAGGAAGTTACTGCATCAAATGGACAAATCATTTTGTTTATTGATGAGATTCATACTGTTGTTGGTGCAGCCATTGACCTTGTTGATGAAGCTGCTGCAAAGCTGAAGATGGAGATCACCTCGAAGCCAACAGAATTGGATGAGATAGACAGAGCGGTCTTAAAATTGGAGATGGAAAAACTCTCTCTGAAAAATGACACTGATAAGGCATCTAAAGAAAGATTAAGCAAGATTGAAAATGATTTGAGTTTACTTAAACAGAAGCAAAAAGAATTAACAGAACAGTGGGACAGTGAAAAGATTTTAATGACTCGGATAAGATCAATCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCTGAGCGTGATTATGACCTGAACCGTGCTGCTGAGCTTAAGTACGGAACTTTGATGTCCCTGCAACGCCAATTAGAAGAAGCTGAAAACAACCTTTCTAACTTCCGAAAGAAATTTCTATTGATTTTAATTAAAAATGCATGTTTTGAAGAGAGAGAGAGAGAGATGGGTGGGGGAATAAATGAGCAATTCATTATTCTAATGAATAGAATAACACTAAGCAGCCTCTGTTTCACTATAGCACTTGGGATTGAAGATGGCTGGAGCTGTAGTTGTTACAATGGTTGTATTTTATTGATGATACATAGTTATAATCCTATCCGTTGCTGGGGATACCTCAATGTTGTGCATGGAACTTACCATTTACACATTTTCTTTGATAAAGCCAGACCCTTCTTTGAAAATGAAGTAACTGTTCATTCAAAGATGGAACGAGTGAAGGGCAGGCTCAAACAGAAGAAAATTGATCTTCATTACACGAAAGAAGCTGTTGAGCTTCTTGGTGTATTGGGTTTTGATCCAAATTTTGGGGCAAGACCAGTTAAAAGGGTAATACAACAATTGGTTGAGAATGAAATTGCTATGGGAGTTTTAAGGGGAGATTTCAAAGAAGAGGACTCGATCATTGTTGATGCGGATACGAGTTCATCAGCCAAGGACCGTTCTCCCCTGAATAGACTGGTTATTAAGAAGCTGGACAGCACTGTTGCGGATGCCATGGTTGCCAATGACTAG 2067 0.4354 MATRRTKPLLSAAVAAARTSRNHNPLSSSRSAPAFAHAHASETTRTTNPLCRPGTADTSNVASAKVMSLSFTRTFHASPPSFRSAASSQITQTEFTDMAWEGVIGAVDAARVSKQQVVETEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATDGFIAQQPKITGDTTGPVVGSHLGSLLDNARKYKKEMGDEYVSVEHFLLAFCSDKRFGQQLFKNLQLSEKALKDAVQAVRGSQRVTDPKINLKPKFGIKSKNIINFDGMATKRIMIISDSDRLQLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKFRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAAIDLVDEAAAKLKMEITSKPTELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKIENDLSLLKQKQKELTEQWDSEKILMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAENNLSNFRKKFLLILIKNACFEEREREMGGGINEQFIILMNRITLSSLCFTIALGIEDGWSCSCYNGCILLMIHSYNPIRCWGYLNVVHGTYHLHIFFDKARPFFENEVTVHSKMERVKGRLKQKKIDLHYTKEAVELLGVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEEDSIIVDADTSSSAKDRSPLNRLVIKKLDSTVADAMVAND* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1857 688 ProSiteProfiles Clp repeat (R) domain profile. 90 235 IPR004176 -
Dod09g1857 688 PANTHER ATP-DEPENDENT CLP PROTEASE 583 684 - -
Dod09g1857 688 MobiDBLite consensus disorder prediction 40 54 - -
Dod09g1857 688 PANTHER BNAC09G42450D PROTEIN 583 684 - -
Dod09g1857 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 479 IPR027417 -
Dod09g1857 688 PANTHER BNAC09G42450D PROTEIN 67 241 - -
Dod09g1857 688 Coils Coil 428 448 - -
Dod09g1857 688 PANTHER BNAC09G42450D PROTEIN 346 479 - -
Dod09g1857 688 PANTHER BNAC09G42450D PROTEIN 278 345 - -
Dod09g1857 688 SMART ClpB_D2_small_2 581 668 IPR019489 -
Dod09g1857 688 CDD AAA 291 364 - -
Dod09g1857 688 Gene3D - 276 364 IPR027417 -
Dod09g1857 688 SUPERFAMILY Double Clp-N motif 94 241 IPR036628 -
Dod09g1857 688 Pfam AAA lid domain 346 400 IPR041546 -
Dod09g1857 688 PANTHER ATP-DEPENDENT CLP PROTEASE 346 479 - -
Dod09g1857 688 PANTHER ATP-DEPENDENT CLP PROTEASE 67 241 - -
Dod09g1857 688 Pfam ATPase family associated with various cellular activities (AAA) 292 346 IPR003959 GO:0005524|GO:0016887
Dod09g1857 688 PANTHER ATP-DEPENDENT CLP PROTEASE 278 345 - -
Dod09g1857 688 Coils Coil 397 417 - -
Dod09g1857 688 Gene3D - 580 670 - -
Dod09g1857 688 Pfam C-terminal, D2-small domain, of ClpB protein 583 654 IPR019489 -
Dod09g1857 688 Pfam Clp amino terminal domain, pathogenicity island component 106 155 IPR004176 -
Dod09g1857 688 Pfam Clp amino terminal domain, pathogenicity island component 183 234 IPR004176 -
Dod09g1857 688 Gene3D - 91 239 IPR036628 -
Dod09g1857 688 Gene3D - 366 478 - -
Dod09g1857 688 Coils Coil 455 482 - -
Dod09g1857 688 Coils Coil 368 388 - -
Dod09g1857 688 MobiDBLite consensus disorder prediction 18 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1857 Dod-Chr9 40185567 40192570 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1857 K03695 - gmx:100782242 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1857 09 40185567 40192570 Dod09g1857 09 40185567 40192570 ECH