Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1837 ATGCTTCCCAGTGATAACGTCGCTCCCTCCACTGAAAAAAAGTACTCATCCCTGATTTCGAAATGCTTAACGACGAAAAGTTTGAAGCTTGGCAAGGCCCTGCACTCTCAACTCATCAAAACCGCGCTTTTCTTTGACCCTTTTATCACCAACGGTCTCATCGACGTGTATTCCAAGTGCGGGTGCTTTGATAGTGCCCAAAAGGTCTTCGATGATCTTCCCAACAAGACCACGCGCTCGTGGAACACGCTGCTCTCAGCGTACTCCAAAATCGGTCTTTTCGATAAAGCTTATAATCTGTTCGATAAAATGCCACAACGGAACCTCGTCAGCTATAACTCACTTATCTCTGGTTGCACGCGCCACGGGTTTCATAAGGAGTCGGTTAGGCTTTTCAGGCTGATGCAAATGGATAGTGATTGTTTGGTGCCGGATGAGTTCACGTTTGTTAGCATAGTTGGGAGCTGTGCTTGTTTGGGTAACCTTAAATGGCTGCGTCAGGTTCATGGGGTGGCGGTTATAATTGGCACGGAGTGGAACATGATCCTTAACAATGCGTTAATTGATGCTTATGGAAAATGTTGTGAGCCCGATTTGTCGTTTTCTGTGTTCTGTTGGATGCCGGAGAGGGATGTCGTGTCTTGGACATCAATGGTTGTGGCTTATAGTCGGGCATCTAGGTTGGATGCGGCTTGCCGGTTGTTTAACGACATGCCGTTTAGGAACACTGTTTCTTGGACTGCTTTGATCACGGGTTTTGCAAGAAACAGGCGTTGTAGTGAAGCTTTGGATCTTTTTCAGCTCATGCTGGAAGAGCGAGCTAGACCTAGTGCTCAAACTTTTGTCAGTGTTCTAGGGGCTTGCACAGATGAGGCTCTTGTAGGAAGAGGGAAACAGGTCCACGGTCAAATTATCAGAAGTAGCACTAGTGGAAACTTGTTTAATGTGTACATATTTAATGCCTTGATTGACATGTATGGTAAGTGTGGAGATATGAAGTCAGCTGAAATTTTGTTTGAGATGGCTCCTATGAGGGATGTGGTATCTTGGAATACATTGATTACTGGGTTTGCACAGAATGGTCATGGGCGAGAATCTTTGGTTGTCTTTAGAAGAATGATAAAAGCCAAGGTGAAGCCCAATCATGTGACATTTCTTGGAGTGATATCTGCCTGTGGCCATGCAGGTCTAGATAATGAAGGGTTAGAATTGCTGGATTTGATGGAAAGGGAATATGGAGTCAAGCCTAGACCCGATCACTATGCTTTATTAGTTGATTTGCTTGGGAGGAAAAATAGGCTCAAGGAAGCTGTGGATTTGATTGAGAAAGCACCTAGTGGAATTAGGGATCACATTGCAATATGGGGGGCAGTCTTAGCTGCCTGTAGAGTTCATGGGAACTTGGACCTTGCTAGCAGGGCTGCAGAAGTTCTGTTTGAGTTAGAGCCTGAAAATACTGCAAGATATGTTATGCTGTCAAACATTTATGCTGCATCTGGAAGATGGGGTGATGCCAATAGAATTAGGGAAATAATGAAGAAGAGAGGTTTAAAGAAAGAAGCAGCTTGTAGTTGGATTGAGTTAAGGGATACCAGGCATGAGTTTGTGGCCAAGGACAAGTTCCATCCACAGATGTGA 1638 0.4475 MLPSDNVAPSTEKKYSSLISKCLTTKSLKLGKALHSQLIKTALFFDPFITNGLIDVYSKCGCFDSAQKVFDDLPNKTTRSWNTLLSAYSKIGLFDKAYNLFDKMPQRNLVSYNSLISGCTRHGFHKESVRLFRLMQMDSDCLVPDEFTFVSIVGSCACLGNLKWLRQVHGVAVIIGTEWNMILNNALIDAYGKCCEPDLSFSVFCWMPERDVVSWTSMVVAYSRASRLDAACRLFNDMPFRNTVSWTALITGFARNRRCSEALDLFQLMLEERARPSAQTFVSVLGACTDEALVGRGKQVHGQIIRSSTSGNLFNVYIFNALIDMYGKCGDMKSAEILFEMAPMRDVVSWNTLITGFAQNGHGRESLVVFRRMIKAKVKPNHVTFLGVISACGHAGLDNEGLELLDLMEREYGVKPRPDHYALLVDLLGRKNRLKEAVDLIEKAPSGIRDHIAIWGAVLAACRVHGNLDLASRAAEVLFELEPENTARYVMLSNIYAASGRWGDANRIREIMKKRGLKKEAACSWIELRDTRHEFVAKDKFHPQM* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1837 545 SUPERFAMILY TPR-like 420 507 IPR011990 GO:0005515
Dod09g1837 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Dod09g1837 545 Gene3D Tetratricopeptide repeat domain 177 297 IPR011990 GO:0005515
Dod09g1837 545 Gene3D Tetratricopeptide repeat domain 77 169 IPR011990 GO:0005515
Dod09g1837 545 Gene3D Tetratricopeptide repeat domain 6 76 IPR011990 GO:0005515
Dod09g1837 545 Gene3D Tetratricopeptide repeat domain 298 398 IPR011990 GO:0005515
Dod09g1837 545 Pfam PPR repeat 213 239 IPR002885 -
Dod09g1837 545 Pfam PPR repeat 51 73 IPR002885 -
Dod09g1837 545 Pfam PPR repeat 110 137 IPR002885 -
Dod09g1837 545 Pfam PPR repeat 185 210 IPR002885 -
Dod09g1837 545 Pfam PPR repeat 318 341 IPR002885 -
Dod09g1837 545 Pfam PPR repeat 80 108 IPR002885 -
Dod09g1837 545 TIGRFAM PPR: pentatricopeptide repeat domain 213 239 IPR002885 -
Dod09g1837 545 TIGRFAM PPR: pentatricopeptide repeat domain 348 381 IPR002885 -
Dod09g1837 545 TIGRFAM PPR: pentatricopeptide repeat domain 80 109 IPR002885 -
Dod09g1837 545 TIGRFAM PPR: pentatricopeptide repeat domain 244 277 IPR002885 -
Dod09g1837 545 TIGRFAM PPR: pentatricopeptide repeat domain 110 145 IPR002885 -
Dod09g1837 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Dod09g1837 545 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 8 535 - -
Dod09g1837 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 111 IPR002885 -
Dod09g1837 545 PANTHER - 8 535 - -
Dod09g1837 545 Pfam E motif 465 527 IPR046848 -
Dod09g1837 545 Gene3D Tetratricopeptide repeat domain 399 538 IPR011990 GO:0005515
Dod09g1837 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 241 IPR002885 -
Dod09g1837 545 Pfam PPR repeat family 241 288 IPR002885 -
Dod09g1837 545 Pfam PPR repeat family 345 392 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1837 Dod-Chr9 39927388 39929311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1837 16 544 Glycoside Hydrolase AT3G49170 32.453 1.81e-85 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1837 - - lang:109343406 856.67