Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1828 ATGGAATCATCAGACAAGGCAACCTTTGGTGGTGTCGTCCTAGGCAGCTGTACCAGACCGTCATGGGCCTTCCTCGCTCTTCTCTTCACCCTCGTCACCATCCTCTCCCTCCAGCTCTCCTCCACCTCCGTCTTCCCCACCTGGGCCCTCATCCCGGCCCACCCCAATCACCAACCATCACCATCCTCGGATATTCCGACGACGTCATGTTCCGGTTTCTTCCGGGGGGGCGTTCCGCGGAGGAAGGTGGTGATGTCGATCGAGGACTTCGGCGGCGTTGGCGACGGCAAGACCTCGAACACGGAATCGTTCCGGAGGGCGATTCGGTACATGCAGCGCTTTCGGGATCGAGGTGGGTCCCAGCTCAATATTCCCAAAGGAACCTGGCTCACTGGTAGTTTCAATCTCACCAGCGATTTCACTCTTTTCCTTCAACAAGGTGCTGTTCTCTTGGCCTCTAAGGACCCAAAAGAATGGCCTATAATTGAGCCATTGCCATCCTATGGAAGAGGGAGAGAGAGGTTAGGAGGAAGACATATTAGCCTTGTACATGGAAATGGAGTCAGAAATGTGGTCATCACAGGACATAATGGGACAGTTGATGGTCAAGGGAGGATGTGGTGGGAACTTTGGTGGAACAGAACGTTGGAGCACACAAGAGGCCACCTCCTTGAACTAATGAACTCGGATAATGTTCTCATAGCAAACCTCACCTTTCGAAATTCTCCTTTTTGGACCATCCATCCTGTTTACTGCAGTAATGTTGTGGTCAAAGGGATGACAATCTTGGCTCCTCTTAATGCCCCAAATACCGATGGCATAGACCCAGATTCAAGTACTAATGTATGTATTGAAGATAACTACATAGAAAGTGGAGATGATCTTGTAGCCATCAAGAGTGGTTGGGATCAATATGGAATCACCATGGCCCATCCTAGCACAAATATCATAGTGAGGAGGGTCTCAGGCACTACCCCAACTTGTTCTGGAGTGGGAATAGGTAGTGAGATGTCTGGTGGAATTTCAAATATTAGAATTGAGGATTTGCATGTGTGGGATTCTGCAGCTGGTGTTCGTATAAAATCTGATAAAGGCAGAGGTGGCTACATATCCAATGTTAGTATAAGCAATATAAGAATGGAAAGAGTCAAGATACCCATTAAGTTCAGTAGAGGTTCAAATGACCATCCTGATGATGGGTGGGATCCAAAAGCTGTTCCTAGATTCAAAGGCATTTCTATCAGTAATGTGGTCAGTGTGAATTCAACAAAAGCCCCAGTTCTGGAAGGTGTAGAGGGCTCATCATTTGAAGGCTTATGCTTCAAAAATATTACCCTGCATGGTATTGCCTTATCTGCAACATGGCATTGTGAGTATGTCTCTGGTTCTGCCATTGAGGTGTTCCCTATTCCATGTCCTGAGCTGCAGAACACTGGCAATTCATCCTGCTGTTCACCTTCCTGA 1464 0.4781 MESSDKATFGGVVLGSCTRPSWAFLALLFTLVTILSLQLSSTSVFPTWALIPAHPNHQPSPSSDIPTTSCSGFFRGGVPRRKVVMSIEDFGGVGDGKTSNTESFRRAIRYMQRFRDRGGSQLNIPKGTWLTGSFNLTSDFTLFLQQGAVLLASKDPKEWPIIEPLPSYGRGRERLGGRHISLVHGNGVRNVVITGHNGTVDGQGRMWWELWWNRTLEHTRGHLLELMNSDNVLIANLTFRNSPFWTIHPVYCSNVVVKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGITMAHPSTNIIVRRVSGTTPTCSGVGIGSEMSGGISNIRIEDLHVWDSAAGVRIKSDKGRGGYISNVSISNIRMERVKIPIKFSRGSNDHPDDGWDPKAVPRFKGISISNVVSVNSTKAPVLEGVEGSSFEGLCFKNITLHGIALSATWHCEYVSGSAIEVFPIPCPELQNTGNSSCCSPS* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1828 487 SUPERFAMILY Pectin lyase-like 80 476 IPR011050 -
Dod09g1828 487 Gene3D - 79 468 IPR012334 -
Dod09g1828 487 SMART pbh1 313 335 IPR006626 -
Dod09g1828 487 SMART pbh1 341 362 IPR006626 -
Dod09g1828 487 SMART pbh1 252 278 IPR006626 -
Dod09g1828 487 SMART pbh1 279 311 IPR006626 -
Dod09g1828 487 SMART pbh1 365 416 IPR006626 -
Dod09g1828 487 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 14 485 - -
Dod09g1828 487 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Dod09g1828 487 PANTHER PECTIN LYASE-RELATED 14 485 - -
Dod09g1828 487 Pfam Glycosyl hydrolases family 28 180 461 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1828 Dod-Chr9 39860280 39865109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1828 13 485 Glycoside Hydrolase AT4G33440 68.354 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1828 - - gmx:100814190 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1828 09 39860280 39865109 Dod09g1828 09 39860280 39865109 ECH