Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1827 ATGAAGACGGTGAAGTCATCCCATTCTTCAATTTTCTTCATGTTCTTCTTTGTGGCCTTTACCAGCATCCAAGTTTGCTTAGCAGACTCTGATAATCTACAAGACACATGCCCCACAGCCCCACTAGAAAAGCAGACCATATTCATCAATGGCCTCCCATGCAAGAACCAAGCCAACAACACGCCTCAAGATTTCAAGACCACGGAACTAAGCAAGGCTGGTGCTAGAGACAAACTGGGCCGCTCATCGATGAAGATTGTCAATGCTACCATTTTCCCTGGCCTCAACACTCTCGGCCTCTCCATTGGAAGAATTGACCTCGAAGTGGACGGGATGGTGAACCTCCACATCCATCCAAGAGCTACTGAGATGATCTTTGTCGACCAAGGCGTAATGGCAGCTTCATTTCTTGACTCACAAAACAAGCTTTTCCAAAAGTTTCTCAAGGCAGGTGATGTGTTTGTGATCCCTAAGGGGTTGTTCCACACCTTTATGAATCGTGGATCAACAGCTGCAATTGTCTACTCTGTGTTCAACAGCCAGAATCCAGGGTTTGAGACCCTCAGTGCTCCTATGCCCTTCTGA 585 0.4701 MKTVKSSHSSIFFMFFFVAFTSIQVCLADSDNLQDTCPTAPLEKQTIFINGLPCKNQANNTPQDFKTTELSKAGARDKLGRSSMKIVNATIFPGLNTLGLSIGRIDLEVDGMVNLHIHPRATEMIFVDQGVMAASFLDSQNKLFQKFLKAGDVFVIPKGLFHTFMNRGSTAAIVYSVFNSQNPGFETLSAPMPF* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1827 194 Pfam Cupin 81 188 IPR006045 -
Dod09g1827 194 SMART Cupin_1_3 68 189 IPR006045 -
Dod09g1827 194 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 15 191 - -
Dod09g1827 194 ProSitePatterns Germin family signature. 111 124 IPR019780 GO:0030145
Dod09g1827 194 SUPERFAMILY RmlC-like cupins 29 185 IPR011051 -
Dod09g1827 194 Gene3D Jelly Rolls 28 192 IPR014710 -
Dod09g1827 194 CDD cupin_OxOx 29 189 - -
Dod09g1827 194 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 15 191 - -
Dod09g1827 194 PRINTS Germin signature 179 194 IPR001929 GO:0030145
Dod09g1827 194 PRINTS Germin signature 116 136 IPR001929 GO:0030145
Dod09g1827 194 PRINTS Germin signature 146 166 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1827 Dod-Chr9 39858558 39859142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1827 6 188 Miscellaneous Gene Families AT3G05930 41.081 4.34e-32 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1827 - - mtr:MTR_3g096330 245.358